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The map label for this gene is ycaN [H]

Identifier: 189353871

GI number: 189353871

Start: 2177502

End: 2178416

Strand: Direct

Name: ycaN [H]

Synonym: BMULJ_05123

Alternate gene names: 189353871

Gene position: 2177502-2178416 (Clockwise)

Preceding gene: 189353868

Following gene: 189353874

Centisome position: 88.05

GC content: 60.44

Gene sequence:

>915_bases
ATGAGATCCAGTAGCGAGAAACTTTCCGGCAGCATTAGCGTGTTCGCCGCCGTAGTGGATGCGGGGACCTTTGTGGGCGC
TGCGGAGGTGATAGGAATGACGCCGCCGGGCGTCAGTCGCGCGATTGCGCGGCTGGAAAAGAGGTTAAACGTCCGGCTCT
TCAACCGGACAACGCGCTCTGTCTCCCTGACTGAAGAGGGCCGCCGCTTTTACGAGCAGGTCATGCCCCATCTGGCCGGC
CTTGAGGAAGCGGCGGCCGCTGCGGCGGGTGGCGCGTCCGCTGTGCGTGGAAAGCTGAGAATCAATCTGGACCCTGTCGT
CTACCGGACCGTTCTCGGGCAGCCACTCGATGCGTTCATGGACACACACCCGGAACTCGAAATCGAGTTCATCGCGCGGG
ACAGTCTTGGCGACCTCGTCATGGACGGCTTCGACCTCGCCGTCCGATTCGGCGAACCCAAAGCCTCCACGCTGATCGCA
AGAAAGCTGCTCGACTCCCGCATCGTGACAGTTGCAGCACCGTCGTACGTTGCACGTTGGGGACGGCCGGCAAAACCCGA
GGACCTGGAAGGTCGACGCCACAGATGCCTCGAATTTCGAAACCCGGAGACTGGCAAGCCGTTCCAGTGGGAATTCCATC
GCAAACGAAAACGCATTGTGGTGAACACTCAGGGACGACTCACGGTCAACGACCCGGGCGCTCTGCTTAACGCATGTCTC
GCCGGTTCCGGGATTGCGCAGATGTTGCTGCTCGGTGCCGAGCCCCTGATTGCCGACGGGCGGTTGATCAATCTCTTTCC
CGAATGGGTAGACGAACGGTATCCGTTATACGTCTACTACGCATCCCGGCACCACGTGCCGGCAAAGACCCGCGCTTTTC
TGGACTTCGTGGTGGAACTGATGCGCAATCACTAA

Upstream 100 bases:

>100_bases
TTTGGCATGATCGACGGACCCCGCCAGCACGGCTGCGCGGCGCAGCGTTCGCCCTCACGCGGTCGATCGCGCTCCGCCAA
CCGTATTAACTTGAGCAACC

Downstream 100 bases:

>100_bases
CGCGCCGGCACGCGCTGCTGCTGTTACGGCGGACCGGCGAGGCAACATCGAATGGCCCGTTACGGATCCGTTGCGGTCTG
CCATGATCAGATTGCGAACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRSSSEKLSGSISVFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNVRLFNRTTRSVSLTEEGRRFYEQVMPHLAG
LEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFIARDSLGDLVMDGFDLAVRFGEPKASTLIA
RKLLDSRIVTVAAPSYVARWGRPAKPEDLEGRRHRCLEFRNPETGKPFQWEFHRKRKRIVVNTQGRLTVNDPGALLNACL
AGSGIAQMLLLGAEPLIADGRLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFVVELMRNH

Sequences:

>Translated_304_residues
MRSSSEKLSGSISVFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNVRLFNRTTRSVSLTEEGRRFYEQVMPHLAG
LEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFIARDSLGDLVMDGFDLAVRFGEPKASTLIA
RKLLDSRIVTVAAPSYVARWGRPAKPEDLEGRRHRCLEFRNPETGKPFQWEFHRKRKRIVVNTQGRLTVNDPGALLNACL
AGSGIAQMLLLGAEPLIADGRLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFVVELMRNH
>Mature_304_residues
MRSSSEKLSGSISVFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNVRLFNRTTRSVSLTEEGRRFYEQVMPHLAG
LEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFMDTHPELEIEFIARDSLGDLVMDGFDLAVRFGEPKASTLIA
RKLLDSRIVTVAAPSYVARWGRPAKPEDLEGRRHRCLEFRNPETGKPFQWEFHRKRKRIVVNTQGRLTVNDPGALLNACL
AGSGIAQMLLLGAEPLIADGRLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFVVELMRNH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=33.6734693877551, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1786401, Length=304, Percent_Identity=32.5657894736842, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=30.8474576271186, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=30.6397306397306, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=32.8859060402685, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789440, Length=281, Percent_Identity=28.4697508896797, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787589, Length=282, Percent_Identity=26.9503546099291, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786448, Length=253, Percent_Identity=26.0869565217391, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=289, Percent_Identity=25.2595155709343, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788706, Length=168, Percent_Identity=27.3809523809524, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789204, Length=260, Percent_Identity=26.5384615384615, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=172, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33735; Mature: 33735

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSSEKLSGSISVFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNVRLFNRTTRS
CCCCCHHHCCHHHHHHHHHHHCCHHCHHHHCCCCCCCHHHHHHHHHHHCCEEEEECCCCE
VSLTEEGRRFYEQVMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFM
EECHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHEECEEEECCCHHHHHHHHCCCHHHHH
DTHPELEIEFIARDSLGDLVMDGFDLAVRFGEPKASTLIARKLLDSRIVTVAAPSYVARW
CCCCCEEEEEEECCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCEEEEECCHHHHHC
GRPAKPEDLEGRRHRCLEFRNPETGKPFQWEFHRKRKRIVVNTQGRLTVNDPGALLNACL
CCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCEEEEECCCEEEECCCHHHHHHHH
AGSGIAQMLLLGAEPLIADGRLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFVVEL
CCCHHHHHHHHCCCCCEECCEEEEECHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
MRNH
HHCC
>Mature Secondary Structure
MRSSSEKLSGSISVFAAVVDAGTFVGAAEVIGMTPPGVSRAIARLEKRLNVRLFNRTTRS
CCCCCHHHCCHHHHHHHHHHHCCHHCHHHHCCCCCCCHHHHHHHHHHHCCEEEEECCCCE
VSLTEEGRRFYEQVMPHLAGLEEAAAAAAGGASAVRGKLRINLDPVVYRTVLGQPLDAFM
EECHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHEECEEEECCCHHHHHHHHCCCHHHHH
DTHPELEIEFIARDSLGDLVMDGFDLAVRFGEPKASTLIARKLLDSRIVTVAAPSYVARW
CCCCCEEEEEEECCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCEEEEECCHHHHHC
GRPAKPEDLEGRRHRCLEFRNPETGKPFQWEFHRKRKRIVVNTQGRLTVNDPGALLNACL
CCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHCCCCEEEEECCCEEEECCCHHHHHHHH
AGSGIAQMLLLGAEPLIADGRLINLFPEWVDERYPLYVYYASRHHVPAKTRAFLDFVVEL
CCCHHHHHHHHCCCCCEECCEEEEECHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
MRNH
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]