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The map label for this gene is sdsB [H]

Identifier: 189353832

GI number: 189353832

Start: 2134722

End: 2135636

Strand: Reverse

Name: sdsB [H]

Synonym: BMULJ_05079

Alternate gene names: 189353832

Gene position: 2135636-2134722 (Counterclockwise)

Preceding gene: 189353835

Following gene: 189353830

Centisome position: 86.35

GC content: 68.85

Gene sequence:

>915_bases
GTGCTGGGGAATCTGTCGACCCTCGATCTGCGGCTGATCCGCGTGTTTCTCGCGGTGACGGACGCGGGCGGCGTATCGGC
GGCGCAGGCGGTGCTGAACGTCGGTCAGTCGACGATCAGCGCGCAGCTGTCGTCGCTCGAGACGCGGCTCGGCTATCGGC
TTTGCGAGCGCGGCCGCAGCGGTTTCCGGCTCACGCCAAAGGGCGAGCGGTTCCACGCGATGAGCCGCAAGCTGCTCGCG
GCGCTCGACGAATTCGGCATGGCCGCGCGGCATATGGATCGCCAGCTGGTCGGCACGCTCAATATCGGACTGATCGGCCA
TACGCCGGTGAGCCAGAACGCGCGGATCGCCGAGGCGATCGCCGCGTTCCGTACGCGCGACGAGGCCGTGCGCTTCTCGA
TCTCGGTGCGCGCGCCGGGCGATCTCGAGGAGAAGCTGCTGAGCGACGAGATCCAGATCGCGGTCGGCTATTTCTGGCAT
CGCGTGCCGTCGCTCGAATACACGCCGCTGTTCGTCGAGCGGCAGGTCGCGTATTGCGGCCGCGGCCATCCCCTGTTCGC
GCGCGCGGGCACGCTGACGCCCGAGGACGTCGCCGGATTCGAGTGGGCCTGGCGCTCGTATCCGCTGCCGGAAGCGCAGA
TGTCGACGACGCCCGACCGCGTGACGGCGACCGCCGACAACATGGAGGCCGTCGCGCTGCTGATCCTGTCCGGCCATCAT
CTCGGCTATCTGCCGCAGCATTTCGCGGCGCCGTACGTCGCCCAAGGGCTGCTCGCGCCGCTCGATCCGGAGCGGCTGCG
TTACGACGTCACGTTTCACATGGTCGTCGCGCGCAGCGGGCGCGGCAATCCGCTCGTCGAAGCGTTTCTCGAGGACCTCG
AGCGCGCGCACCACACGCCGGATACGCCGGCCTGA

Upstream 100 bases:

>100_bases
CGCGGCTCGGCGCACAGTTGTACGCGTTCCGGCCTTAAAGAAGAATGCGAAGATATCGACGTAAACATCGATCTTCATCG
ATGCAAGGAAGGGGAATAGC

Downstream 100 bases:

>100_bases
CACCGTTCTGCGCCGCGCGCCACACGCGGCTTCGCCGCCCGCGCGATCAAGGCACGGGCAGCCCGGCGTCGTGTTTGACC
TCGCGCAGCGACAGCGCCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLGNLSTLDLRLIRVFLAVTDAGGVSAAQAVLNVGQSTISAQLSSLETRLGYRLCERGRSGFRLTPKGERFHAMSRKLLA
ALDEFGMAARHMDRQLVGTLNIGLIGHTPVSQNARIAEAIAAFRTRDEAVRFSISVRAPGDLEEKLLSDEIQIAVGYFWH
RVPSLEYTPLFVERQVAYCGRGHPLFARAGTLTPEDVAGFEWAWRSYPLPEAQMSTTPDRVTATADNMEAVALLILSGHH
LGYLPQHFAAPYVAQGLLAPLDPERLRYDVTFHMVVARSGRGNPLVEAFLEDLERAHHTPDTPA

Sequences:

>Translated_304_residues
MLGNLSTLDLRLIRVFLAVTDAGGVSAAQAVLNVGQSTISAQLSSLETRLGYRLCERGRSGFRLTPKGERFHAMSRKLLA
ALDEFGMAARHMDRQLVGTLNIGLIGHTPVSQNARIAEAIAAFRTRDEAVRFSISVRAPGDLEEKLLSDEIQIAVGYFWH
RVPSLEYTPLFVERQVAYCGRGHPLFARAGTLTPEDVAGFEWAWRSYPLPEAQMSTTPDRVTATADNMEAVALLILSGHH
LGYLPQHFAAPYVAQGLLAPLDPERLRYDVTFHMVVARSGRGNPLVEAFLEDLERAHHTPDTPA
>Mature_304_residues
MLGNLSTLDLRLIRVFLAVTDAGGVSAAQAVLNVGQSTISAQLSSLETRLGYRLCERGRSGFRLTPKGERFHAMSRKLLA
ALDEFGMAARHMDRQLVGTLNIGLIGHTPVSQNARIAEAIAAFRTRDEAVRFSISVRAPGDLEEKLLSDEIQIAVGYFWH
RVPSLEYTPLFVERQVAYCGRGHPLFARAGTLTPEDVAGFEWAWRSYPLPEAQMSTTPDRVTATADNMEAVALLILSGHH
LGYLPQHFAAPYVAQGLLAPLDPERLRYDVTFHMVVARSGRGNPLVEAFLEDLERAHHTPDTPA

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=178, Percent_Identity=29.7752808988764, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081904, Length=190, Percent_Identity=27.8947368421053, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789204, Length=195, Percent_Identity=28.2051282051282, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=296, Percent_Identity=23.6486486486486, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787879, Length=189, Percent_Identity=28.042328042328, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33468; Mature: 33468

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGNLSTLDLRLIRVFLAVTDAGGVSAAQAVLNVGQSTISAQLSSLETRLGYRLCERGRS
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC
GFRLTPKGERFHAMSRKLLAALDEFGMAARHMDRQLVGTLNIGLIGHTPVSQNARIAEAI
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHH
AAFRTRDEAVRFSISVRAPGDLEEKLLSDEIQIAVGYFWHRVPSLEYTPLFVERQVAYCG
HHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
RGHPLFARAGTLTPEDVAGFEWAWRSYPLPEAQMSTTPDRVTATADNMEAVALLILSGHH
CCCEEEEECCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCCEEECCCCHHHEEHEEECCCC
LGYLPQHFAAPYVAQGLLAPLDPERLRYDVTFHMVVARSGRGNPLVEAFLEDLERAHHTP
CCCCHHHHCCHHHHHHCCCCCCHHHEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCC
DTPA
CCCC
>Mature Secondary Structure
MLGNLSTLDLRLIRVFLAVTDAGGVSAAQAVLNVGQSTISAQLSSLETRLGYRLCERGRS
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC
GFRLTPKGERFHAMSRKLLAALDEFGMAARHMDRQLVGTLNIGLIGHTPVSQNARIAEAI
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHH
AAFRTRDEAVRFSISVRAPGDLEEKLLSDEIQIAVGYFWHRVPSLEYTPLFVERQVAYCG
HHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
RGHPLFARAGTLTPEDVAGFEWAWRSYPLPEAQMSTTPDRVTATADNMEAVALLILSGHH
CCCEEEEECCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCCEEECCCCHHHEEHEEECCCC
LGYLPQHFAAPYVAQGLLAPLDPERLRYDVTFHMVVARSGRGNPLVEAFLEDLERAHHTP
CCCCHHHHCCHHHHHHCCCCCCHHHEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCC
DTPA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]