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The map label for this gene is ycdC [C]

Identifier: 189353821

GI number: 189353821

Start: 2122409

End: 2123083

Strand: Direct

Name: ycdC [C]

Synonym: BMULJ_05068

Alternate gene names: 189353821

Gene position: 2122409-2123083 (Clockwise)

Preceding gene: 189353820

Following gene: 189353824

Centisome position: 85.82

GC content: 62.96

Gene sequence:

>675_bases
ATGAAAGCAGGAAGCAAGGCCGCCACGTCCGACAACCGCGCGCTTCCGTCCGATGCACGGCGCAAATACGATCCCGAGCA
AACCAAGCGCAACATCCTCGACGTCGCCACGCAGGAATTCTCCGCGATGGGGCTCGCCGGTGCGCGTGTCGACGCGATCG
CCGAGCGCACGAACACGACGAAGCGGATGCTGTACTACTACTTCGACAGCAAGGAAGGCCTGTACGAGGCCGTGCTCGAA
AAGGTGTACGGCGACATCCGCGCGCTCGAGCAGGAGCTGCACGTCGGCGACATGGAGCCGCGCGAAGGGATGCGCCGCCT
CGTCGAATTCACGTTCGACTATCACGACAAGCATCGCGACTTCGTTCGCCTCGTATCGATCGAGAACATCCACGGCGCGA
AGTATCTCGAGCAGCTGAAGTCGTTCAAGAACCGCAACGTCAGCATCATCAAGACGCTCGAGGAACTGCTCGAACGCGGC
GCGGCGAGCGGCGCGTTTCGCAAGGACATCGACGCGTTCGATCTGCATCTGCTGATCAGCTCGTTCTGCTTCCATCGCGT
CTCGAACCGCTACACGTTCGGCGCCGCGTTCGGTCGCGATCCGTCGGCGCCGCGGCTGCGCACGCGCCATCGCGACACGA
TCGCCGAAGCCGTGCTGCGCTACATCGCCGCGTAA

Upstream 100 bases:

>100_bases
CGGAACGGCGCCGGAAAGCGAGCCGGCGCTCGACGAATCGTCGATTTTCCGCATGCTAGAATGCCCGTTCCACGCCGCCG
CGAAGCCAGAACAACCGCAC

Downstream 100 bases:

>100_bases
CGCAGACGTTCGCGGTCGCTCGTTTCCGTTTCCGTTTCTGCGCTCGCGTCGGCCGACACGGGCGACGCCAGTGCGCGCCG
CGCCTTCTCCTCCGGGCTCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKAGSKAATSDNRALPSDARRKYDPEQTKRNILDVATQEFSAMGLAGARVDAIAERTNTTKRMLYYYFDSKEGLYEAVLE
KVYGDIRALEQELHVGDMEPREGMRRLVEFTFDYHDKHRDFVRLVSIENIHGAKYLEQLKSFKNRNVSIIKTLEELLERG
AASGAFRKDIDAFDLHLLISSFCFHRVSNRYTFGAAFGRDPSAPRLRTRHRDTIAEAVLRYIAA

Sequences:

>Translated_224_residues
MKAGSKAATSDNRALPSDARRKYDPEQTKRNILDVATQEFSAMGLAGARVDAIAERTNTTKRMLYYYFDSKEGLYEAVLE
KVYGDIRALEQELHVGDMEPREGMRRLVEFTFDYHDKHRDFVRLVSIENIHGAKYLEQLKSFKNRNVSIIKTLEELLERG
AASGAFRKDIDAFDLHLLISSFCFHRVSNRYTFGAAFGRDPSAPRLRTRHRDTIAEAVLRYIAA
>Mature_224_residues
MKAGSKAATSDNRALPSDARRKYDPEQTKRNILDVATQEFSAMGLAGARVDAIAERTNTTKRMLYYYFDSKEGLYEAVLE
KVYGDIRALEQELHVGDMEPREGMRRLVEFTFDYHDKHRDFVRLVSIENIHGAKYLEQLKSFKNRNVSIIKTLEELLERG
AASGAFRKDIDAFDLHLLISSFCFHRVSNRYTFGAAFGRDPSAPRLRTRHRDTIAEAVLRYIAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25687; Mature: 25687

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAGSKAATSDNRALPSDARRKYDPEQTKRNILDVATQEFSAMGLAGARVDAIAERTNTT
CCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHH
KRMLYYYFDSKEGLYEAVLEKVYGDIRALEQELHVGDMEPREGMRRLVEFTFDYHDKHRD
HHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
FVRLVSIENIHGAKYLEQLKSFKNRNVSIIKTLEELLERGAASGAFRKDIDAFDLHLLIS
HHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHH
SFCFHRVSNRYTFGAAFGRDPSAPRLRTRHRDTIAEAVLRYIAA
HHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKAGSKAATSDNRALPSDARRKYDPEQTKRNILDVATQEFSAMGLAGARVDAIAERTNTT
CCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHH
KRMLYYYFDSKEGLYEAVLEKVYGDIRALEQELHVGDMEPREGMRRLVEFTFDYHDKHRD
HHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
FVRLVSIENIHGAKYLEQLKSFKNRNVSIIKTLEELLERGAASGAFRKDIDAFDLHLLIS
HHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHH
SFCFHRVSNRYTFGAAFGRDPSAPRLRTRHRDTIAEAVLRYIAA
HHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA