Click here to switch to the map view.

The map label for this gene is yfiB [H]

Identifier: 189353654

GI number: 189353654

Start: 1914444

End: 1914959

Strand: Reverse

Name: yfiB [H]

Synonym: BMULJ_04899

Alternate gene names: 189353654

Gene position: 1914959-1914444 (Counterclockwise)

Preceding gene: 189353655

Following gene: 189353653

Centisome position: 77.43

GC content: 67.25

Gene sequence:

>516_bases
ATGATGGGACACTCGTTGCCTGTGCGCCGGGGGCGCATGTGGGTTGGCGGCGCGACGCTGCTGGGGGTGCTGCTGAGCGC
GGGCTGTCATACGGCGCCGCCGCATCGCGGTCTGACCGAGACGCAGGTGACGACGCTCAAGTCGGCCGGCTTCAAGGAGA
CCGAGCAGGGCTTCGAATTTGGCGCGGCCGGCCCGATTCTGTTCGACTTCGATCGCTACAACCTGAAGCCCGACGTGCGG
CGGATCGTCGAGCGGATCGGGCGCACGCTGCACTCGGCGGGGATCGATGGCGTGCGGGTGTACGGATACACGGATGATGA
GGGGACTGACGGCTACGATCTCGAGCTGTCGCGTCGGCGCGCGGAGGTGGTCGCGATCGAACTGGTCGACGTCGGGCTCG
ATGCGCGACGCATCGCGATCGTGGGGAGAGGGAAGCACGATCCGGTCGGCGATAACCGGATGCCGGTGGGCAGGGCGCAG
AATCGACGGGCGGCGATTGTGGTTTCGCCAAGGTAG

Upstream 100 bases:

>100_bases
CGAAGCGCACGCGACCGGGATCGTGGCAGTCGGCGGGCGGAGCGGCGGGATCGGCGTGATGTCGATGGCGTCGCGCGCAT
ATTCGTGTGGAAAGGGGGCG

Downstream 100 bases:

>100_bases
GGTTGTCGGGGCGTGCGGCGGTGAAGGGTTCTTTTCAGCGCCGCACGTGATTGACTGTTTTAGCGCTTCTATTCGGGCGG
CGGGGGAAAGGGGGGGCTTG

Product: putative OmpA family transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MMGHSLPVRRGRMWVGGATLLGVLLSAGCHTAPPHRGLTETQVTTLKSAGFKETEQGFEFGAAGPILFDFDRYNLKPDVR
RIVERIGRTLHSAGIDGVRVYGYTDDEGTDGYDLELSRRRAEVVAIELVDVGLDARRIAIVGRGKHDPVGDNRMPVGRAQ
NRRAAIVVSPR

Sequences:

>Translated_171_residues
MMGHSLPVRRGRMWVGGATLLGVLLSAGCHTAPPHRGLTETQVTTLKSAGFKETEQGFEFGAAGPILFDFDRYNLKPDVR
RIVERIGRTLHSAGIDGVRVYGYTDDEGTDGYDLELSRRRAEVVAIELVDVGLDARRIAIVGRGKHDPVGDNRMPVGRAQ
NRRAAIVVSPR
>Mature_171_residues
MMGHSLPVRRGRMWVGGATLLGVLLSAGCHTAPPHRGLTETQVTTLKSAGFKETEQGFEFGAAGPILFDFDRYNLKPDVR
RIVERIGRTLHSAGIDGVRVYGYTDDEGTDGYDLELSRRRAEVVAIELVDVGLDARRIAIVGRGKHDPVGDNRMPVGRAQ
NRRAAIVVSPR

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=147, Percent_Identity=34.0136054421769, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=36.1904761904762, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18705; Mature: 18705

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGHSLPVRRGRMWVGGATLLGVLLSAGCHTAPPHRGLTETQVTTLKSAGFKETEQGFEF
CCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHCCCC
GAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYGYTDDEGTDGYDLELSRRR
CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEECCCC
AEVVAIELVDVGLDARRIAIVGRGKHDPVGDNRMPVGRAQNRRAAIVVSPR
EEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MMGHSLPVRRGRMWVGGATLLGVLLSAGCHTAPPHRGLTETQVTTLKSAGFKETEQGFEF
CCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHCCCC
GAAGPILFDFDRYNLKPDVRRIVERIGRTLHSAGIDGVRVYGYTDDEGTDGYDLELSRRR
CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEECCCC
AEVVAIELVDVGLDARRIAIVGRGKHDPVGDNRMPVGRAQNRRAAIVVSPR
EEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6357787; 9205837; 9278503; 6298574 [H]