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The map label for this gene is nfeD

Identifier: 189353619

GI number: 189353619

Start: 1878221

End: 1879795

Strand: Direct

Name: nfeD

Synonym: BMULJ_04863

Alternate gene names: NA

Gene position: 1878221-1879795 (Clockwise)

Preceding gene: 189353618

Following gene: 189353620

Centisome position: 75.94

GC content: 75.05

Gene sequence:

>1575_bases
ATGCACGCTCCACGTCACGGACCGCCGCACGCCGCGCGCGGCGGCCGCCCTCGTCACCCGCTGTCCGCGCGGGTCGCGCG
CGCCGCGCTGTTCGCGGTGCTGCTCGTCGTATGCGCGGCCGTCGCCGCGCCGCCGCCCGCGCCCACGCCCTCGCTTGCGC
CTGCGGGCCCGGCGCCCGTGATCGTGATTCCGCTCAACGGCGCGATCGGGCCGGCCAGCGCCGACTTCGTCGTCCGTTCG
CTCAAGCGCGCCGCGCGCGAGCATGCGCCGCTCGCGATCCTGCAGCTCGATACGCCCGGCGGCCTCGACACGTCGATGCG
GCAGATCATCAAGGCGATCCTCGGCTCGCCGGTGCCGGTCGCGGCCTTCGTCGCGCCGGGCGGCGCGCGTGCCGCGAGCG
CGGGCACCTACATCGTCTATGCGAGCCATATCGCGGCGATGGCGCCCGGTACCAATCTCGGCGCGGCGTCGCCGGTACAG
CTCGGCGTCGGCGGCGGTACGCCGGCCGCGCCGCCGCAGGCGCCGACGTCGCGCGGTGCGGGCCCGTCATCGGCATCGGG
CACGCCGGCCGCGCTGCCGGCCGACACGCAGTCGACCGAGATCCGCAAGGCGACGCAGGACGCGGCCGCCTATCTGCGCG
GCCTCGCGCAACTGCGCGGACGCAACGCCGAATGGGCGGAGCGCGCTGTGCGCGAGGCGGTCAGCCTGTCGGCGAACGAA
GCGCGCGCGCAGCACGTCGTCGACCTGATCGCGCAGGACCCGGCCGATCTCGCGCGGCAGCTCGACGGCCGCAGCGTCAC
GACGGCCGCCGGCACGCTGCGGCTGGCGACCGCGCATGCGCCGCTCGTCGTCGTCGAGCCCGACTGGCGCAGCCGCTTCC
TGTCGATCGTCGCCGATCCGAACGTCGCGCTGATCCTGCTGACGATCGGCATCTACGGACTGTTCTTCGAATTCGCGAAC
CCCGGCTTCGTGCTGCCGGGTGTCGCCGGGACGATCTGCCTGCTGGTCGGGCTGTTCGCGATGCAGTTGCTGCCCGTCAG
CTATGCGGGCCTCGCGCTCGTGCTGCTCGGTCTCGGCTGCCTCGTCGCCGAAGCGTTTCTGCCGACCTTCGGCGTGCTCG
GCTTCGGCGGCATCGTCGCATTCGTGATCGGCGCGCTGATGCTGATCGACACCGACGTGCCGGGCTACGGGATTCCGTGG
CCCGTCATCGCGAGCCTCGCGCTCGGCGGCGCGCTGCTCGTCGCCGGCGTGTCGAGCGTTGCGCTGCGCGCGCGGCGGCG
GCCGGTCGTCACGGGCGGCGAGGCGATCGTCGGCAGCATCGGCGAAGTGCTCGACGACGGCCTGCACGCCGACCAGCCGC
ACGGGCCGAACGGCGCGGCGCCGCCGTCGGCGGCCGGCTGGGCGCGCGTACACGGCGAGCGCTGGCGCGTCGCGTGCAGC
GCGCCGCTCGCGGCCGGCTGCCGCGTGCGCGTGACCGGACGGCAGGGGCTCACGCTCACCGTCGCGCCGCTGTACGACGC
GGTGCCCGCGCCGCGCGCGCCGCTTGCATCGCCACCACAGGGAGACGCTCGATGA

Upstream 100 bases:

>100_bases
TCTTCCCGCTCTGCGCCGAAACCGCCTAATCTTTAAGCGTCGGGCCCAGCCCATTCCGCGAACCGGACGGCATGCGGCCG
CGCGCCGCCCGGACGTCCCG

Downstream 100 bases:

>100_bases
TCGGTTATACGTTCGGCTTCGGCAGCGTTTTGATCGTGTTCGTCGCAGTGCTGATCGCGTCGTCGATCCGCATCTTCCGC
GAGTACGAACGCGGCGTCGT

Product: membrane-bound ClpP class serine protease

Products: NA

Alternate protein names: Nodulation Efficiency Protein NfeD; NfeD Protein; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; Nodulation Protein NfeD; Membrane Bound Peptidase; Transmembrane Protein; NfeD Family Protein; Serine Protease; Membrane-Bound Serine Protease-Like Protein; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; NfeD Nodulation Like Protein Membrane Protein; Nodulation Efficiency Protein Nfed; Membrane-Bound Protease; NfeD-Like Family; Protease/Transporter; Membrane-Bound ClpP-Class Protease; S49 Family Serine Protease; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Nodulation Protein Nfed; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MHAPRHGPPHAARGGRPRHPLSARVARAALFAVLLVVCAAVAAPPPAPTPSLAPAGPAPVIVIPLNGAIGPASADFVVRS
LKRAAREHAPLAILQLDTPGGLDTSMRQIIKAILGSPVPVAAFVAPGGARAASAGTYIVYASHIAAMAPGTNLGAASPVQ
LGVGGGTPAAPPQAPTSRGAGPSSASGTPAALPADTQSTEIRKATQDAAAYLRGLAQLRGRNAEWAERAVREAVSLSANE
ARAQHVVDLIAQDPADLARQLDGRSVTTAAGTLRLATAHAPLVVVEPDWRSRFLSIVADPNVALILLTIGIYGLFFEFAN
PGFVLPGVAGTICLLVGLFAMQLLPVSYAGLALVLLGLGCLVAEAFLPTFGVLGFGGIVAFVIGALMLIDTDVPGYGIPW
PVIASLALGGALLVAGVSSVALRARRRPVVTGGEAIVGSIGEVLDDGLHADQPHGPNGAAPPSAAGWARVHGERWRVACS
APLAAGCRVRVTGRQGLTLTVAPLYDAVPAPRAPLASPPQGDAR

Sequences:

>Translated_524_residues
MHAPRHGPPHAARGGRPRHPLSARVARAALFAVLLVVCAAVAAPPPAPTPSLAPAGPAPVIVIPLNGAIGPASADFVVRS
LKRAAREHAPLAILQLDTPGGLDTSMRQIIKAILGSPVPVAAFVAPGGARAASAGTYIVYASHIAAMAPGTNLGAASPVQ
LGVGGGTPAAPPQAPTSRGAGPSSASGTPAALPADTQSTEIRKATQDAAAYLRGLAQLRGRNAEWAERAVREAVSLSANE
ARAQHVVDLIAQDPADLARQLDGRSVTTAAGTLRLATAHAPLVVVEPDWRSRFLSIVADPNVALILLTIGIYGLFFEFAN
PGFVLPGVAGTICLLVGLFAMQLLPVSYAGLALVLLGLGCLVAEAFLPTFGVLGFGGIVAFVIGALMLIDTDVPGYGIPW
PVIASLALGGALLVAGVSSVALRARRRPVVTGGEAIVGSIGEVLDDGLHADQPHGPNGAAPPSAAGWARVHGERWRVACS
APLAAGCRVRVTGRQGLTLTVAPLYDAVPAPRAPLASPPQGDAR
>Mature_524_residues
MHAPRHGPPHAARGGRPRHPLSARVARAALFAVLLVVCAAVAAPPPAPTPSLAPAGPAPVIVIPLNGAIGPASADFVVRS
LKRAAREHAPLAILQLDTPGGLDTSMRQIIKAILGSPVPVAAFVAPGGARAASAGTYIVYASHIAAMAPGTNLGAASPVQ
LGVGGGTPAAPPQAPTSRGAGPSSASGTPAALPADTQSTEIRKATQDAAAYLRGLAQLRGRNAEWAERAVREAVSLSANE
ARAQHVVDLIAQDPADLARQLDGRSVTTAAGTLRLATAHAPLVVVEPDWRSRFLSIVADPNVALILLTIGIYGLFFEFAN
PGFVLPGVAGTICLLVGLFAMQLLPVSYAGLALVLLGLGCLVAEAFLPTFGVLGFGGIVAFVIGALMLIDTDVPGYGIPW
PVIASLALGGALLVAGVSSVALRARRRPVVTGGEAIVGSIGEVLDDGLHADQPHGPNGAAPPSAAGWARVHGERWRVACS
APLAAGCRVRVTGRQGLTLTVAPLYDAVPAPRAPLASPPQGDAR

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52945; Mature: 52945

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPRHGPPHAARGGRPRHPLSARVARAALFAVLLVVCAAVAAPPPAPTPSLAPAGPAPV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
IVIPLNGAIGPASADFVVRSLKRAAREHAPLAILQLDTPGGLDTSMRQIIKAILGSPVPV
EEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCE
AAFVAPGGARAASAGTYIVYASHIAAMAPGTNLGAASPVQLGVGGGTPAAPPQAPTSRGA
EEEECCCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
GPSSASGTPAALPADTQSTEIRKATQDAAAYLRGLAQLRGRNAEWAERAVREAVSLSANE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
ARAQHVVDLIAQDPADLARQLDGRSVTTAAGTLRLATAHAPLVVVEPDWRSRFLSIVADP
HHHHHHHHHHHCCHHHHHHHCCCCEEEEHHCEEEEEECCCCEEEECCCHHHHHHHHEECC
NVALILLTIGIYGLFFEFANPGFVLPGVAGTICLLVGLFAMQLLPVSYAGLALVLLGLGC
CCEEHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAEAFLPTFGVLGFGGIVAFVIGALMLIDTDVPGYGIPWPVIASLALGGALLVAGVSSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ALRARRRPVVTGGEAIVGSIGEVLDDGLHADQPHGPNGAAPPSAAGWARVHGERWRVACS
HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEC
APLAAGCRVRVTGRQGLTLTVAPLYDAVPAPRAPLASPPQGDAR
CCCCCCCEEEEECCCCCEEEECCHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHAPRHGPPHAARGGRPRHPLSARVARAALFAVLLVVCAAVAAPPPAPTPSLAPAGPAPV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
IVIPLNGAIGPASADFVVRSLKRAAREHAPLAILQLDTPGGLDTSMRQIIKAILGSPVPV
EEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCE
AAFVAPGGARAASAGTYIVYASHIAAMAPGTNLGAASPVQLGVGGGTPAAPPQAPTSRGA
EEEECCCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
GPSSASGTPAALPADTQSTEIRKATQDAAAYLRGLAQLRGRNAEWAERAVREAVSLSANE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
ARAQHVVDLIAQDPADLARQLDGRSVTTAAGTLRLATAHAPLVVVEPDWRSRFLSIVADP
HHHHHHHHHHHCCHHHHHHHCCCCEEEEHHCEEEEEECCCCEEEECCCHHHHHHHHEECC
NVALILLTIGIYGLFFEFANPGFVLPGVAGTICLLVGLFAMQLLPVSYAGLALVLLGLGC
CCEEHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAEAFLPTFGVLGFGGIVAFVIGALMLIDTDVPGYGIPWPVIASLALGGALLVAGVSSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ALRARRRPVVTGGEAIVGSIGEVLDDGLHADQPHGPNGAAPPSAAGWARVHGERWRVACS
HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEC
APLAAGCRVRVTGRQGLTLTVAPLYDAVPAPRAPLASPPQGDAR
CCCCCCCEEEEECCCCCEEEECCHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA