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The map label for this gene is dppB [H]

Identifier: 189353211

GI number: 189353211

Start: 1440417

End: 1441487

Strand: Direct

Name: dppB [H]

Synonym: BMULJ_04449

Alternate gene names: 189353211

Gene position: 1440417-1441487 (Clockwise)

Preceding gene: 189353210

Following gene: 189353212

Centisome position: 58.24

GC content: 67.51

Gene sequence:

>1071_bases
ATGTCGACTCCCGTCTCCACTCTCGAAGCGCTCCGCACGCTGCCCGCGCGGCGTCCGGCCGTCCGCTGGACGCTGCGCGT
GCTGCGCTGGGCGGTCACGCTCGCCGTCACGTTCGCGGGGCTGCTCGCGCTGACCTTCGTGATCGGCCGCAAGGTGCCGA
TCGATCCGGTGCTCGCGATCCTCGGCGATCGCGCGTCGGCCGAAGCGTACGCGGCCGAGCGCATCGCGCTCGGACTCGAC
AAGCCGCTCGTCACGCAATTCCTGATCTACGCGCGCGACGTGCTGCACGGCAATTTCGGCGTCTCGCTGCTGACGTCGAA
CCCCGTGCTCGACGATATCAAGCGCGTGTTTCCCGCGACGCTCGAACTCGCGACGATCGCGACGCTGATCGGCATCGCGA
TCGGCGTGCCGCTCGGCGTCGCGGCCGCGGTGAAGCACAACCGGCCGATCGATCACATCGCGCGCTTCATCGGGCTGATC
GGCAATTCGGTGCCGGTGTTCTGGCTCGGGCTGATGGGGCTGCTGCTGTTCTATGCGCGGCTGCATTGGGTTGCCGGGCC
CGGCCGCCTCGATCCGGTATACGACGGGATGGTCGACACGCGCACCGGCAGCCTGCTGATCGACGCAGTGCTCGCCGGCG
AATGGGACGTGTTGCGCAACGCGCTCTCGCACATCGCGCTGCCGGCCGCGATCCTCGGCTACTACTCGGTCGCGTATCTG
AGCCGGATGACGCGCTCGTTCATGCTCGATCAGCTGAGCCAGGAATACATCGTCACCGCGCGCGCCAAGGGCCTGTCCGA
GCGCCGCGTGATCTGGCGTCACGCGTTCGGCAACATCGCGGTGCCGCTGCTGACCGTGATCGCGCTCACGTACAGCAACC
TGCTCGAAGGCTCGGTGCTGACCGAGATCGTGTTCGCGTGGCCGGGCCTCGGCTCCTATCTGACGGGCGCGCTGCTGAAT
GCCGACATGAACGCGGTGCTCGGCGCGACGCTCGTGATCGGCGTGATGTTCATCACCGTCAACCTGCTGACCGACGCGCT
CTACCGCGTGTTCGATCCGCGTGCACGCTAA

Upstream 100 bases:

>100_bases
GCGCAAGTCGCGACGCGGCCCGGCGTCAGCGGGCTCGAAGTCGGGCCGATCAACGACCTCGTGTCCTACCGCAACCTGAA
GAAGCAGTAACGGCCGCCGC

Downstream 100 bases:

>100_bases
GGACCGCTTTGCCATGCCCGCTTCCCCGCTGCTTCCGTTTCACTCGCTTCCGAAGGTCGACCGATGACGAATGCCGACCG
TGTCACGCTGCGCGCGTGGC

Product: peptide/nickel transport system permease protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSTPVSTLEALRTLPARRPAVRWTLRVLRWAVTLAVTFAGLLALTFVIGRKVPIDPVLAILGDRASAEAYAAERIALGLD
KPLVTQFLIYARDVLHGNFGVSLLTSNPVLDDIKRVFPATLELATIATLIGIAIGVPLGVAAAVKHNRPIDHIARFIGLI
GNSVPVFWLGLMGLLLFYARLHWVAGPGRLDPVYDGMVDTRTGSLLIDAVLAGEWDVLRNALSHIALPAAILGYYSVAYL
SRMTRSFMLDQLSQEYIVTARAKGLSERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVLTEIVFAWPGLGSYLTGALLN
ADMNAVLGATLVIGVMFITVNLLTDALYRVFDPRAR

Sequences:

>Translated_356_residues
MSTPVSTLEALRTLPARRPAVRWTLRVLRWAVTLAVTFAGLLALTFVIGRKVPIDPVLAILGDRASAEAYAAERIALGLD
KPLVTQFLIYARDVLHGNFGVSLLTSNPVLDDIKRVFPATLELATIATLIGIAIGVPLGVAAAVKHNRPIDHIARFIGLI
GNSVPVFWLGLMGLLLFYARLHWVAGPGRLDPVYDGMVDTRTGSLLIDAVLAGEWDVLRNALSHIALPAAILGYYSVAYL
SRMTRSFMLDQLSQEYIVTARAKGLSERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVLTEIVFAWPGLGSYLTGALLN
ADMNAVLGATLVIGVMFITVNLLTDALYRVFDPRAR
>Mature_355_residues
STPVSTLEALRTLPARRPAVRWTLRVLRWAVTLAVTFAGLLALTFVIGRKVPIDPVLAILGDRASAEAYAAERIALGLDK
PLVTQFLIYARDVLHGNFGVSLLTSNPVLDDIKRVFPATLELATIATLIGIAIGVPLGVAAAVKHNRPIDHIARFIGLIG
NSVPVFWLGLMGLLLFYARLHWVAGPGRLDPVYDGMVDTRTGSLLIDAVLAGEWDVLRNALSHIALPAAILGYYSVAYLS
RMTRSFMLDQLSQEYIVTARAKGLSERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVLTEIVFAWPGLGSYLTGALLNA
DMNAVLGATLVIGVMFITVNLLTDALYRVFDPRAR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=324, Percent_Identity=43.5185185185185, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=43.3333333333333, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1789888, Length=291, Percent_Identity=33.6769759450172, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=32.9073482428115, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=32.1167883211679, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787497, Length=332, Percent_Identity=28.6144578313253, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1788504, Length=280, Percent_Identity=28.9285714285714, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38675; Mature: 38544

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPVSTLEALRTLPARRPAVRWTLRVLRWAVTLAVTFAGLLALTFVIGRKVPIDPVLAI
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LGDRASAEAYAAERIALGLDKPLVTQFLIYARDVLHGNFGVSLLTSNPVLDDIKRVFPAT
HCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
LELATIATLIGIAIGVPLGVAAAVKHNRPIDHIARFIGLIGNSVPVFWLGLMGLLLFYAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LHWVAGPGRLDPVYDGMVDTRTGSLLIDAVLAGEWDVLRNALSHIALPAAILGYYSVAYL
HHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRMTRSFMLDQLSQEYIVTARAKGLSERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TEIVFAWPGLGSYLTGALLNADMNAVLGATLVIGVMFITVNLLTDALYRVFDPRAR
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STPVSTLEALRTLPARRPAVRWTLRVLRWAVTLAVTFAGLLALTFVIGRKVPIDPVLAI
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LGDRASAEAYAAERIALGLDKPLVTQFLIYARDVLHGNFGVSLLTSNPVLDDIKRVFPAT
HCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
LELATIATLIGIAIGVPLGVAAAVKHNRPIDHIARFIGLIGNSVPVFWLGLMGLLLFYAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LHWVAGPGRLDPVYDGMVDTRTGSLLIDAVLAGEWDVLRNALSHIALPAAILGYYSVAYL
HHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SRMTRSFMLDQLSQEYIVTARAKGLSERRVIWRHAFGNIAVPLLTVIALTYSNLLEGSVL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TEIVFAWPGLGSYLTGALLNADMNAVLGATLVIGVMFITVNLLTDALYRVFDPRAR
HHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]