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The map label for this gene is ddpC [H]

Identifier: 189353212

GI number: 189353212

Start: 1441551

End: 1442468

Strand: Direct

Name: ddpC [H]

Synonym: BMULJ_04450

Alternate gene names: 189353212

Gene position: 1441551-1442468 (Clockwise)

Preceding gene: 189353211

Following gene: 189353213

Centisome position: 58.29

GC content: 70.81

Gene sequence:

>918_bases
ATGACGAATGCCGACCGTGTCACGCTGCGCGCGTGGCTGCTTTCCGATGCGCCGGCGTCGCGCTCGCAGGCCGCGCTCGG
GCTCACGTATCGCCGCTGGCGCCGCTTCGCGACGAATCCGCTCAACCTGTTCGGGCTCGCGATCCTCGTCGCGCTGATCG
TCGTGGCGATCGTCGGCCCGCTGATCATGCCGCACGATCCGCTGCGCCAGGTGCTCGGCGATCGCCTGCTGCCGCCGGGC
TCGCCGTCACACTGGCTCGGCACCGACCAGCTCGGCCGCGACATCCTGTCCCGGCTGATCGGCGGGTCGCGGCTCACGCT
CGGCATCGCGCTGCTCGTCGTCGCGATCGTCGTGCCGATCGGGCTGGCGATCGGCACGACGGCCGGCTATTGCGGCGGCT
TCGTCGACAGCGTGCTGATGCGCATCACCGACATCGCGCTCGCGTTCCCGAAGATCGTGCTCGCACTCGCGTTTGCCGCG
GCGCTCGGGCCCGGCGTCGTCAATGCGGTCGTCGCGATCTCGATCACCGCGTGGCCCGCCTATGCGCGGCTCGCGCGCGC
CGAGACGATCCGCATCGCGCAGGCCGACTACATTCATGCCGCGCGGCTGCAAGGCGCGTCGGGGCCGCGCATCCTGCTGC
GCTATATCGTGCCGCTGTGCATGTCGTCGGTGATCGTACGCGCGACGCTCGACATGGCCGGCATCATCCTGACCGTCGCC
GGCCTCGGCTTCCTCGGCCTCGGCGCGCAGCCGCCGAGCCCCGAATGGGGTTTCATGGTCGCGTCGGGCCGCAACGTGCT
GCTCGACGCATGGTGGGTCGCGACGCTGCCCGGCGCGGCGATCCTGCTCGTGAGCCTCGCGTTCAACCTGCTCGGCGACG
GGCTGCGCGACGTCTTCGATCCGCGACATGGAGCGTGA

Upstream 100 bases:

>100_bases
CGCGCTCTACCGCGTGTTCGATCCGCGTGCACGCTAAGGACCGCTTTGCCATGCCCGCTTCCCCGCTGCTTCCGTTTCAC
TCGCTTCCGAAGGTCGACCG

Downstream 100 bases:

>100_bases
CATGCCAACCCCTTCCACCGTCGCAACCGTCGCGCCGCTGTGCGAGATCGACGGCCTGAAAATCGGCTTTCGTGGCCACG
ACGGCACCGTGACCGACGCG

Product: peptide/nickel transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTNADRVTLRAWLLSDAPASRSQAALGLTYRRWRRFATNPLNLFGLAILVALIVVAIVGPLIMPHDPLRQVLGDRLLPPG
SPSHWLGTDQLGRDILSRLIGGSRLTLGIALLVVAIVVPIGLAIGTTAGYCGGFVDSVLMRITDIALAFPKIVLALAFAA
ALGPGVVNAVVAISITAWPAYARLARAETIRIAQADYIHAARLQGASGPRILLRYIVPLCMSSVIVRATLDMAGIILTVA
GLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILLVSLAFNLLGDGLRDVFDPRHGA

Sequences:

>Translated_305_residues
MTNADRVTLRAWLLSDAPASRSQAALGLTYRRWRRFATNPLNLFGLAILVALIVVAIVGPLIMPHDPLRQVLGDRLLPPG
SPSHWLGTDQLGRDILSRLIGGSRLTLGIALLVVAIVVPIGLAIGTTAGYCGGFVDSVLMRITDIALAFPKIVLALAFAA
ALGPGVVNAVVAISITAWPAYARLARAETIRIAQADYIHAARLQGASGPRILLRYIVPLCMSSVIVRATLDMAGIILTVA
GLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILLVSLAFNLLGDGLRDVFDPRHGA
>Mature_304_residues
TNADRVTLRAWLLSDAPASRSQAALGLTYRRWRRFATNPLNLFGLAILVALIVVAIVGPLIMPHDPLRQVLGDRLLPPGS
PSHWLGTDQLGRDILSRLIGGSRLTLGIALLVVAIVVPIGLAIGTTAGYCGGFVDSVLMRITDIALAFPKIVLALAFAAA
LGPGVVNAVVAISITAWPAYARLARAETIRIAQADYIHAARLQGASGPRILLRYIVPLCMSSVIVRATLDMAGIILTVAG
LGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILLVSLAFNLLGDGLRDVFDPRHGA

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=46.6165413533835, Blast_Score=231, Evalue=4e-62,
Organism=Escherichia coli, GI1787054, Length=273, Percent_Identity=43.5897435897436, Blast_Score=215, Evalue=4e-57,
Organism=Escherichia coli, GI1789964, Length=275, Percent_Identity=45.0909090909091, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=40.1639344262295, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1787549, Length=269, Percent_Identity=39.0334572490706, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787498, Length=271, Percent_Identity=32.4723247232472, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=30.5309734513274, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32179; Mature: 32047

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNADRVTLRAWLLSDAPASRSQAALGLTYRRWRRFATNPLNLFGLAILVALIVVAIVGP
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LIMPHDPLRQVLGDRLLPPGSPSHWLGTDQLGRDILSRLIGGSRLTLGIALLVVAIVVPI
HCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GLAIGTTAGYCGGFVDSVLMRITDIALAFPKIVLALAFAAALGPGVVNAVVAISITAWPA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
YARLARAETIRIAQADYIHAARLQGASGPRILLRYIVPLCMSSVIVRATLDMAGIILTVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILLVSLAFNLLGDGLRDVFD
HHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
PRHGA
CCCCC
>Mature Secondary Structure 
TNADRVTLRAWLLSDAPASRSQAALGLTYRRWRRFATNPLNLFGLAILVALIVVAIVGP
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LIMPHDPLRQVLGDRLLPPGSPSHWLGTDQLGRDILSRLIGGSRLTLGIALLVVAIVVPI
HCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GLAIGTTAGYCGGFVDSVLMRITDIALAFPKIVLALAFAAALGPGVVNAVVAISITAWPA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
YARLARAETIRIAQADYIHAARLQGASGPRILLRYIVPLCMSSVIVRATLDMAGIILTVA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFLGLGAQPPSPEWGFMVASGRNVLLDAWWVATLPGAAILLVSLAFNLLGDGLRDVFD
HHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
PRHGA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]