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The map label for this gene is ydcR [H]

Identifier: 189353202

GI number: 189353202

Start: 1428138

End: 1429559

Strand: Reverse

Name: ydcR [H]

Synonym: BMULJ_04438

Alternate gene names: 189353202

Gene position: 1429559-1428138 (Counterclockwise)

Preceding gene: 189353217

Following gene: 189353199

Centisome position: 57.8

GC content: 68.35

Gene sequence:

>1422_bases
GTGAAGCGTTACGAACAACTGGCCGACGATCTGCACGCGCAGATCGAACGCGGCGTCTATCGGCCCGGCGACCGGATTCC
GTCGGTACGGCACGCGAGCCGCCAGCACCGGCTCAGCGTGACGACCGTGCTGCGCGCGTATCTGCTGCTGGAAAGCCGCG
GCCTGATCGAAAGCCGGCCGCAGTCGGGCTATTTCGTGCGCGCGCGTCTCGACGCGCCGGTGCAGGCCGAGCTGCATGCA
TCGACGCCGGCGGCCGAGCCGTCGGCGGTCGACGTGAGCCGGCTCGTGCTGTCGACGCTGCGTTCGATCGCGCGCGACGA
TGCGGTGCCGCTCGGTTCGCCGTATCCCGACGCGTCGCAGTTTCCGGTGCAGCGGCTCGCACGCTACGCGCAGGCGATCG
GCCGGCGCCGCACGCGCTGGGGCGTGATCGACGATCTGCCGCCCGGCAACCAGGAACTGATCCGCCAGATCGCGCGCCGC
TACGCGGAGCGCGGCATCGTCGTCGAGCCCGGCGAGATCGTAATGACGATCGGCGCGACCGAAGCGATCAACCTGTGCCT
GCAGGCGGTCGCGAAGCCGGGCGACACGATCGCGGTCGAATCGCCGACGTTCTACGCGATGCTGCACGCGATCGAGCGGC
TCGGCATGCGTGCGCTCGAAGTCGCGACGCATCCGGCAGACGGAATCGACATCGACGCGCTCGCGCGGATTCTCGAACGC
GAGCCGGTGGCGGCCTGCATGGTGATGCCGAACTTCCAGAACCCGCTCGGCTTCCGGATGCCGGACGAGCGCAAGCGCGC
GCTCGTCGAACTGCTCGCAAAGCACGGCGTGCCGGCGATCGAAAGCGACGTCTATCACGAGCTGTACTACGGCGACGCGG
CGCCGAGCGCGCTGAAGTCGTTCGGTCGCGACGGGCTCGTGCTGCACTGCGCGTCGTTTACGAAGAGTCTGTCGCCGCGC
TACCGGATCGGCTGGGCGATGCCGGGCCGGTATCGCGACCGCGTCGAGAAGCTCAAATTCCTGAATACGCTCGCGACGCC
CGCGATCGAGCAGCTGGCGATCGCCGAGTATCTGCAATACGACGGCTACGATTTCCATCTGCGACGCATGCGCAAGCACT
ACGCGCAGCAGGCGAATCTGATGAGCTCGATGGTGCGGCGATTTTTCCCGGACGGCACGCGGCTGTCGCAGCCGCAGGGC
GGCTACGTGCTGTGGGTCGAGCTGCCGCCGCAAGTCGACGCGATGAAGCTGTACGGGCTCGCGCTCGCGCAGCGGATCAC
GGTCGGGCCCGGCCACATGTTCTCGGCGGGCGCCGACTACCGGCACTTCATCCGGCTCAACTACAGCTATCCGTGGTCGC
GGCAGATGGAGGAGGCGCTGAAGGTGCTCGGGCGGCTCGCGGCCGAATGCGCGGCCGCGTGA

Upstream 100 bases:

>100_bases
TGTGTGTACACCTGTTCACTTCAAAAAAGAGTACAGTTGCGGCGTTTCGCACAGTGCGCATCGCAACTGTGTTGTCGAAG
GCGGATTGAAAGGGAGGCGA

Downstream 100 bases:

>100_bases
GCACGCCGCGCGGCGTCGCGCGCGGCGCGGCGGCCCGCTAGGCGGCGATCGCAGTTTCCGGATCGTCGGTCGGTTCGGCG
GCGGCGCGGCGTGCATCGGC

Product: 2-aminoadipate transaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MKRYEQLADDLHAQIERGVYRPGDRIPSVRHASRQHRLSVTTVLRAYLLLESRGLIESRPQSGYFVRARLDAPVQAELHA
STPAAEPSAVDVSRLVLSTLRSIARDDAVPLGSPYPDASQFPVQRLARYAQAIGRRRTRWGVIDDLPPGNQELIRQIARR
YAERGIVVEPGEIVMTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRALEVATHPADGIDIDALARILER
EPVAACMVMPNFQNPLGFRMPDERKRALVELLAKHGVPAIESDVYHELYYGDAAPSALKSFGRDGLVLHCASFTKSLSPR
YRIGWAMPGRYRDRVEKLKFLNTLATPAIEQLAIAEYLQYDGYDFHLRRMRKHYAQQANLMSSMVRRFFPDGTRLSQPQG
GYVLWVELPPQVDAMKLYGLALAQRITVGPGHMFSAGADYRHFIRLNYSYPWSRQMEEALKVLGRLAAECAAA

Sequences:

>Translated_473_residues
MKRYEQLADDLHAQIERGVYRPGDRIPSVRHASRQHRLSVTTVLRAYLLLESRGLIESRPQSGYFVRARLDAPVQAELHA
STPAAEPSAVDVSRLVLSTLRSIARDDAVPLGSPYPDASQFPVQRLARYAQAIGRRRTRWGVIDDLPPGNQELIRQIARR
YAERGIVVEPGEIVMTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRALEVATHPADGIDIDALARILER
EPVAACMVMPNFQNPLGFRMPDERKRALVELLAKHGVPAIESDVYHELYYGDAAPSALKSFGRDGLVLHCASFTKSLSPR
YRIGWAMPGRYRDRVEKLKFLNTLATPAIEQLAIAEYLQYDGYDFHLRRMRKHYAQQANLMSSMVRRFFPDGTRLSQPQG
GYVLWVELPPQVDAMKLYGLALAQRITVGPGHMFSAGADYRHFIRLNYSYPWSRQMEEALKVLGRLAAECAAA
>Mature_473_residues
MKRYEQLADDLHAQIERGVYRPGDRIPSVRHASRQHRLSVTTVLRAYLLLESRGLIESRPQSGYFVRARLDAPVQAELHA
STPAAEPSAVDVSRLVLSTLRSIARDDAVPLGSPYPDASQFPVQRLARYAQAIGRRRTRWGVIDDLPPGNQELIRQIARR
YAERGIVVEPGEIVMTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRALEVATHPADGIDIDALARILER
EPVAACMVMPNFQNPLGFRMPDERKRALVELLAKHGVPAIESDVYHELYYGDAAPSALKSFGRDGLVLHCASFTKSLSPR
YRIGWAMPGRYRDRVEKLKFLNTLATPAIEQLAIAEYLQYDGYDFHLRRMRKHYAQQANLMSSMVRRFFPDGTRLSQPQG
GYVLWVELPPQVDAMKLYGLALAQRITVGPGHMFSAGADYRHFIRLNYSYPWSRQMEEALKVLGRLAAECAAA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=316, Percent_Identity=25.3164556962025, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI33469970, Length=316, Percent_Identity=25.3164556962025, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI4507369, Length=182, Percent_Identity=25.8241758241758, Blast_Score=77, Evalue=5e-14,
Organism=Escherichia coli, GI1787710, Length=473, Percent_Identity=42.9175475687104, Blast_Score=394, Evalue=1e-111,
Organism=Escherichia coli, GI1790797, Length=465, Percent_Identity=36.989247311828, Blast_Score=316, Evalue=3e-87,
Organism=Saccharomyces cerevisiae, GI6321000, Length=324, Percent_Identity=22.5308641975309, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356535, Length=346, Percent_Identity=23.121387283237, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53059; Mature: 53059

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYEQLADDLHAQIERGVYRPGDRIPSVRHASRQHRLSVTTVLRAYLLLESRGLIESRP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QSGYFVRARLDAPVQAELHASTPAAEPSAVDVSRLVLSTLRSIARDDAVPLGSPYPDASQ
CCCEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
FPVQRLARYAQAIGRRRTRWGVIDDLPPGNQELIRQIARRYAERGIVVEPGEIVMTIGAT
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCEEEEECCH
EAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRALEVATHPADGIDIDALARILER
HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHC
EPVAACMVMPNFQNPLGFRMPDERKRALVELLAKHGVPAIESDVYHELYYGDAAPSALKS
CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH
FGRDGLVLHCASFTKSLSPRYRIGWAMPGRYRDRVEKLKFLNTLATPAIEQLAIAEYLQY
CCCCCEEEEEHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DGYDFHLRRMRKHYAQQANLMSSMVRRFFPDGTRLSQPQGGYVLWVELPPQVDAMKLYGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
ALAQRITVGPGHMFSAGADYRHFIRLNYSYPWSRQMEEALKVLGRLAAECAAA
HHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRYEQLADDLHAQIERGVYRPGDRIPSVRHASRQHRLSVTTVLRAYLLLESRGLIESRP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QSGYFVRARLDAPVQAELHASTPAAEPSAVDVSRLVLSTLRSIARDDAVPLGSPYPDASQ
CCCEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
FPVQRLARYAQAIGRRRTRWGVIDDLPPGNQELIRQIARRYAERGIVVEPGEIVMTIGAT
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCEEEEECCH
EAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRALEVATHPADGIDIDALARILER
HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHHHC
EPVAACMVMPNFQNPLGFRMPDERKRALVELLAKHGVPAIESDVYHELYYGDAAPSALKS
CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH
FGRDGLVLHCASFTKSLSPRYRIGWAMPGRYRDRVEKLKFLNTLATPAIEQLAIAEYLQY
CCCCCEEEEEHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DGYDFHLRRMRKHYAQQANLMSSMVRRFFPDGTRLSQPQGGYVLWVELPPQVDAMKLYGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHH
ALAQRITVGPGHMFSAGADYRHFIRLNYSYPWSRQMEEALKVLGRLAAECAAA
HHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]