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The map label for this gene is potD [H]

Identifier: 189353113

GI number: 189353113

Start: 1296672

End: 1297640

Strand: Reverse

Name: potD [H]

Synonym: BMULJ_04349

Alternate gene names: 189353113

Gene position: 1297640-1296672 (Counterclockwise)

Preceding gene: 189353114

Following gene: 189353112

Centisome position: 52.47

GC content: 67.49

Gene sequence:

>969_bases
GTGCTGCGCGTGCTCGCGTGGCCGGGCTATGCGGATCGCGACACGGTCGCCGCATTCGAAGCGCAGTTCGGTGCGCGTGT
CGAAGTGACGTTCGTCGATTCCGACGAAGCGTTGTGGGCGCGCATGCATAGCGCGTCGCCGCCGCCGTACGACGTGCTCG
CGGCGAACACGGCCGAGATCCAGCGCTATGCGCGCGGCAAGCTGCTCGCGCCGATCGAGCTGTCGCGCATTCCGAACCGC
CGGCGGCAACTGCCGGCGTTTCAGCAACTCGCCGCGATCGGCGGGCTGGCGCAGGGCGATGCGGTCTACGGGATTCCGTT
CACGTATTCGTCGATGGGCGTGATCTACGATCGCCGGCAGGTGCCTGCCGCGCCGCGCTCGATGCTCGCATTGTGGGATC
GCCGCTATCGCGGCAAGGTGCTCGACTTCAACAGCGCGCAGCACAATTTTTCGTTTACCGCGCTCGCGCTCGGCTATCGC
GATCCGTTTCGCCTGACACCGGCACAGACGCTCGTCGTCGCGCGCAAGCTGATCGACCTGCGCCGCAATCTGCTCACGTA
CTACACGCTACCCGAAGAAGCGACCGCGCTGTTCGTCGAACATCGCGCGGCGCTGATGTTCGGCAACTACGGCACGCAGC
AGGTGCAGTTGCTGCGCCGTGCCGGCGCGGACGTCGGCTATGCGATTCCGGACGAAGGCGCGCTCGCCTGGCTCGACTGC
TGGGCCGTCACGCGCGACGCCGACCGCCCGGACCTCGCGTTCGCATGGATCAACTACATGCTCGAACCCGCGATCGGCGC
GCTCTTGACCGAACGCCAGGGACTCGCGAACACGCTCGCGCCGCCGCACGGCCCGGACCTCGCCGGTCAGCATCTGGTCT
GGATACAGCCCGTCGAGAACATCGCCCGGCGCGAGGCGCTGTGGAGCCGCATCGTATCGGGCGATCGACCGGAACGCTTC
CGCCCATGA

Upstream 100 bases:

>100_bases
GCCTGAACGCGGCGCCACGCGCCGCATGTTCGTCAAGCTGGCGCTCGGCTTGCTGTGTCCGCCGATCGTCGCATTCTCCG
CCGAAGCCGCGAACCGCAAC

Downstream 100 bases:

>100_bases
TCCGACTCGGGCTCACCTCGAAGCTGTCGATCCTGTTCGCATGCATCGGCGTGATCGCGTCCGGCTCGACCGGCTACTAC
ACGTATCGCGCGAACCGCGC

Product: spermidine/putrescine transport system substrate-binding protein

Products: NA

Alternate protein names: SPBP [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MLRVLAWPGYADRDTVAAFEAQFGARVEVTFVDSDEALWARMHSASPPPYDVLAANTAEIQRYARGKLLAPIELSRIPNR
RRQLPAFQQLAAIGGLAQGDAVYGIPFTYSSMGVIYDRRQVPAAPRSMLALWDRRYRGKVLDFNSAQHNFSFTALALGYR
DPFRLTPAQTLVVARKLIDLRRNLLTYYTLPEEATALFVEHRAALMFGNYGTQQVQLLRRAGADVGYAIPDEGALAWLDC
WAVTRDADRPDLAFAWINYMLEPAIGALLTERQGLANTLAPPHGPDLAGQHLVWIQPVENIARREALWSRIVSGDRPERF
RP

Sequences:

>Translated_322_residues
MLRVLAWPGYADRDTVAAFEAQFGARVEVTFVDSDEALWARMHSASPPPYDVLAANTAEIQRYARGKLLAPIELSRIPNR
RRQLPAFQQLAAIGGLAQGDAVYGIPFTYSSMGVIYDRRQVPAAPRSMLALWDRRYRGKVLDFNSAQHNFSFTALALGYR
DPFRLTPAQTLVVARKLIDLRRNLLTYYTLPEEATALFVEHRAALMFGNYGTQQVQLLRRAGADVGYAIPDEGALAWLDC
WAVTRDADRPDLAFAWINYMLEPAIGALLTERQGLANTLAPPHGPDLAGQHLVWIQPVENIARREALWSRIVSGDRPERF
RP
>Mature_322_residues
MLRVLAWPGYADRDTVAAFEAQFGARVEVTFVDSDEALWARMHSASPPPYDVLAANTAEIQRYARGKLLAPIELSRIPNR
RRQLPAFQQLAAIGGLAQGDAVYGIPFTYSSMGVIYDRRQVPAAPRSMLALWDRRYRGKVLDFNSAQHNFSFTALALGYR
DPFRLTPAQTLVVARKLIDLRRNLLTYYTLPEEATALFVEHRAALMFGNYGTQQVQLLRRAGADVGYAIPDEGALAWLDC
WAVTRDADRPDLAFAWINYMLEPAIGALLTERQGLANTLAPPHGPDLAGQHLVWIQPVENIARREALWSRIVSGDRPERF
RP

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine. Polyamine binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=285, Percent_Identity=23.859649122807, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 36134; Mature: 36134

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVLAWPGYADRDTVAAFEAQFGARVEVTFVDSDEALWARMHSASPPPYDVLAANTAEI
CEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCHHEEECCHHHH
QRYARGKLLAPIELSRIPNRRRQLPAFQQLAAIGGLAQGDAVYGIPFTYSSMGVIYDRRQ
HHHHCCCEECCEEHHHCCCHHHCCHHHHHHHHHCCCCCCCEEEECCEEECCCCEEEECCC
VPAAPRSMLALWDRRYRGKVLDFNSAQHNFSFTALALGYRDPFRLTPAQTLVVARKLIDL
CCCCHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
RRNLLTYYTLPEEATALFVEHRAALMFGNYGTQQVQLLRRAGADVGYAIPDEGALAWLDC
HHHHEEEEECCHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCEECCCCCCEEEEEE
WAVTRDADRPDLAFAWINYMLEPAIGALLTERQGLANTLAPPHGPDLAGQHLVWIQPVEN
EHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEEECCHHH
IARREALWSRIVSGDRPERFRP
HHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLRVLAWPGYADRDTVAAFEAQFGARVEVTFVDSDEALWARMHSASPPPYDVLAANTAEI
CEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCHHEEECCHHHH
QRYARGKLLAPIELSRIPNRRRQLPAFQQLAAIGGLAQGDAVYGIPFTYSSMGVIYDRRQ
HHHHCCCEECCEEHHHCCCHHHCCHHHHHHHHHCCCCCCCEEEECCEEECCCCEEEECCC
VPAAPRSMLALWDRRYRGKVLDFNSAQHNFSFTALALGYRDPFRLTPAQTLVVARKLIDL
CCCCHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
RRNLLTYYTLPEEATALFVEHRAALMFGNYGTQQVQLLRRAGADVGYAIPDEGALAWLDC
HHHHEEEEECCHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCEECCCCCCEEEEEE
WAVTRDADRPDLAFAWINYMLEPAIGALLTERQGLANTLAPPHGPDLAGQHLVWIQPVEN
EHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEEECCHHH
IARREALWSRIVSGDRPERFRP
HHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]