Click here to switch to the map view.

The map label for this gene is ybfI [H]

Identifier: 189352954

GI number: 189352954

Start: 1109660

End: 1110505

Strand: Direct

Name: ybfI [H]

Synonym: BMULJ_04188

Alternate gene names: 189352954

Gene position: 1109660-1110505 (Clockwise)

Preceding gene: 189352952

Following gene: 189352962

Centisome position: 44.87

GC content: 69.98

Gene sequence:

>846_bases
GTGCGCCGTACCGTCCGATCGTCCACGATGCCGTCGCCGTTCTGGCGCGACGCCGCGCTGCCGTTCATCGAAGCGCGCAC
CGTCGACGACGGGCGCGAAATCTGCTACGTGAAGCACACGCACGACACGTTCTCGATCGGCGCGATCGTGGGCGGCACGA
GCACGTACGTGAACGGCACGACGAACCAGCACGTCGGGCGTGGCGTGCTCGTCATCATCGATCCGGAACAGGTGCATGCG
TGCAATCCGTACGGGCCCGACAACTGGGCGTACCGGATGGTGTACGTCGACGTGCCGTGGCTCGCGCGGCTGCAGCATGC
GCTCGGCCGCGACGCGAACACGGATTTCCACGGGTTTTCGTCGAAATGGACGCAGCGGCGCGATCTGTTCGCGCAGTTCG
GTCGTTTCTACCGCACGCTCGTCGCGCCCGGCGTCGACGCGCTCGCGAAGGAGAGCGCGGCGGTCGCGTTCTTCACGCGG
CTGCACGGCGCGCTCGACCGCGCGGTGCCCGATGCGCGGCGCAGCGACGACAACGCGAAGCTCGCGCGCGCGGCCGACTA
CATCGCCGCGCACTGCCGGCAGCCGCTGACGCTCGACGCGATCTGCGCAGCGGCCGATCTGTCGCCGTCGTATCTGATCC
GCGCGTTCGGCGCGCGCTACGGGATGACGCCGCATGCGTTCCTGATCGACCGTCGCGTGCAGTACGGGCGTGCGGAACTG
CGCCGCGGTCGTCCGATCGCCGACGTCGCGCTCGATGCCGGTTTCGCCGATCAGGCGCATTTCCAGCGCGCGTTCCGCCG
GATCGCGGCCGCGACGCCCGGCCAGTATCGCGGCGCGGCGCGCTGA

Upstream 100 bases:

>100_bases
GAAACCGCGCGCGCCGGCAGCGAAGCGATGCGCGCCGCTTGCGCGGTGCGACGCAGTCTTGTACGGTGTGCATTCGTCAT
TCGCTCCGGGAGCCCGTCGC

Downstream 100 bases:

>100_bases
AGCGCCGCGCGCGCCGCGAGGCGAGGCGTCGAGATTAGACGTCGAGCAGGTACAACGCGCTTCCCGCCAGCAGCAACGCC
ATCAGCCGATTGAATACGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MRRTVRSSTMPSPFWRDAALPFIEARTVDDGREICYVKHTHDTFSIGAIVGGTSTYVNGTTNQHVGRGVLVIIDPEQVHA
CNPYGPDNWAYRMVYVDVPWLARLQHALGRDANTDFHGFSSKWTQRRDLFAQFGRFYRTLVAPGVDALAKESAAVAFFTR
LHGALDRAVPDARRSDDNAKLARAADYIAAHCRQPLTLDAICAAADLSPSYLIRAFGARYGMTPHAFLIDRRVQYGRAEL
RRGRPIADVALDAGFADQAHFQRAFRRIAAATPGQYRGAAR

Sequences:

>Translated_281_residues
MRRTVRSSTMPSPFWRDAALPFIEARTVDDGREICYVKHTHDTFSIGAIVGGTSTYVNGTTNQHVGRGVLVIIDPEQVHA
CNPYGPDNWAYRMVYVDVPWLARLQHALGRDANTDFHGFSSKWTQRRDLFAQFGRFYRTLVAPGVDALAKESAAVAFFTR
LHGALDRAVPDARRSDDNAKLARAADYIAAHCRQPLTLDAICAAADLSPSYLIRAFGARYGMTPHAFLIDRRVQYGRAEL
RRGRPIADVALDAGFADQAHFQRAFRRIAAATPGQYRGAAR
>Mature_281_residues
MRRTVRSSTMPSPFWRDAALPFIEARTVDDGREICYVKHTHDTFSIGAIVGGTSTYVNGTTNQHVGRGVLVIIDPEQVHA
CNPYGPDNWAYRMVYVDVPWLARLQHALGRDANTDFHGFSSKWTQRRDLFAQFGRFYRTLVAPGVDALAKESAAVAFFTR
LHGALDRAVPDARRSDDNAKLARAADYIAAHCRQPLTLDAICAAADLSPSYLIRAFGARYGMTPHAFLIDRRVQYGRAEL
RRGRPIADVALDAGFADQAHFQRAFRRIAAATPGQYRGAAR

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31268; Mature: 31268

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTVRSSTMPSPFWRDAALPFIEARTVDDGREICYVKHTHDTFSIGAIVGGTSTYVNGT
CCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEECCC
TNQHVGRGVLVIIDPEQVHACNPYGPDNWAYRMVYVDVPWLARLQHALGRDANTDFHGFS
CCCCCCCEEEEEECCCCEEECCCCCCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCC
SKWTQRRDLFAQFGRFYRTLVAPGVDALAKESAAVAFFTRLHGALDRAVPDARRSDDNAK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
LARAADYIAAHCRQPLTLDAICAAADLSPSYLIRAFGARYGMTPHAFLIDRRVQYGRAEL
HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RRGRPIADVALDAGFADQAHFQRAFRRIAAATPGQYRGAAR
HCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRRTVRSSTMPSPFWRDAALPFIEARTVDDGREICYVKHTHDTFSIGAIVGGTSTYVNGT
CCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEECCC
TNQHVGRGVLVIIDPEQVHACNPYGPDNWAYRMVYVDVPWLARLQHALGRDANTDFHGFS
CCCCCCCEEEEEECCCCEEECCCCCCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCC
SKWTQRRDLFAQFGRFYRTLVAPGVDALAKESAAVAFFTRLHGALDRAVPDARRSDDNAK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
LARAADYIAAHCRQPLTLDAICAAADLSPSYLIRAFGARYGMTPHAFLIDRRVQYGRAEL
HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RRGRPIADVALDAGFADQAHFQRAFRRIAAATPGQYRGAAR
HCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]