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The map label for this gene is yeaM [H]

Identifier: 189352906

GI number: 189352906

Start: 1052130

End: 1052918

Strand: Reverse

Name: yeaM [H]

Synonym: BMULJ_04140

Alternate gene names: 189352906

Gene position: 1052918-1052130 (Counterclockwise)

Preceding gene: 189352909

Following gene: 189352897

Centisome position: 42.57

GC content: 71.48

Gene sequence:

>789_bases
ATGTCCGCCCCCCTTCTTCCCGCGCGGCTCGTGCTCAGCGACGACGGTCCGTTCGTCGCCGCGGCCGTGCTCACGCAGCG
CGATGCGCGTACGACCGCGCCGCATGCGCATGCGCGCGGGCAGCTCGTCGGCGCCTTGAGCGGGCTGCTGTCGATCGGGC
TCGATGATCAGGACTGGGTCGTACCGGCGATCCATGCGATCTGGATTCCGCCGCACTGCCGGCACGGGCTGCAGTCGTTC
GGACCGTTTTCGGGATGGTCGGTGTTCGTGGCCGAGGCGCGCTGCGGCGCCTTGCCGTCGGAACCGCGCGCGATCCGTAC
GACGCCGTTGCTGCGCGAGGCCGTGCGGCGCGCCGCGACTTGGGATGGATCGGCGCTCGACGCCGCGCAGACGCGGATCG
GCGAGGTGATCGTCGACGAGATCGCCGCGGCGGACGCGCAGTCGCTCGGGCTCGTGCGGCCGCGCGACCCACGGCTCGTG
CGGATCACCGATGCGCTCGCCGCCGATCTGGCCGACAACCGCCGGCTCGAAGACTGGGCGCGCTGGGCCGGGCTCGGCGC
ACGCACGCTGAGCCGGCGTTTCGTCGCGGAGACGGGGCTGACGTTCGCGCAGTGGCGTCAGCAGGCGCGGCTGATGCGCG
CGCTCGAGAAAGTGGCCGACGGTGTGCCGGTCACGACGATCGCGCTCGATCTCGGCTACGAGAACGTGAGCGCGTTCATC
GACATGTTTCGGCGTGCGCTGGGGACGACGCCGGGGAAGTATGGGGAGCTGGCGCGTAGATCGCCGTAA

Upstream 100 bases:

>100_bases
CGCATCGTCCGGCTCCATGTCTGTGATCGAAGCGCACAATTTACGCGTGCGATCGATGCCGATCTCCGGTATAAAAGCCA
TTCGATACGGAGATTCGGCC

Downstream 100 bases:

>100_bases
ATGGCGAATGCGTCATTCGTAGCCCATCCGCAGATCCTGTGCCTGCTTGCTCAGTTCCTCCATTGCATCGGCACTCTCTT
GGTCGCGCTCAGCCTTGTAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSAPLLPARLVLSDDGPFVAAAVLTQRDARTTAPHAHARGQLVGALSGLLSIGLDDQDWVVPAIHAIWIPPHCRHGLQSF
GPFSGWSVFVAEARCGALPSEPRAIRTTPLLREAVRRAATWDGSALDAAQTRIGEVIVDEIAAADAQSLGLVRPRDPRLV
RITDALAADLADNRRLEDWARWAGLGARTLSRRFVAETGLTFAQWRQQARLMRALEKVADGVPVTTIALDLGYENVSAFI
DMFRRALGTTPGKYGELARRSP

Sequences:

>Translated_262_residues
MSAPLLPARLVLSDDGPFVAAAVLTQRDARTTAPHAHARGQLVGALSGLLSIGLDDQDWVVPAIHAIWIPPHCRHGLQSF
GPFSGWSVFVAEARCGALPSEPRAIRTTPLLREAVRRAATWDGSALDAAQTRIGEVIVDEIAAADAQSLGLVRPRDPRLV
RITDALAADLADNRRLEDWARWAGLGARTLSRRFVAETGLTFAQWRQQARLMRALEKVADGVPVTTIALDLGYENVSAFI
DMFRRALGTTPGKYGELARRSP
>Mature_261_residues
SAPLLPARLVLSDDGPFVAAAVLTQRDARTTAPHAHARGQLVGALSGLLSIGLDDQDWVVPAIHAIWIPPHCRHGLQSFG
PFSGWSVFVAEARCGALPSEPRAIRTTPLLREAVRRAATWDGSALDAAQTRIGEVIVDEIAAADAQSLGLVRPRDPRLVR
ITDALAADLADNRRLEDWARWAGLGARTLSRRFVAETGLTFAQWRQQARLMRALEKVADGVPVTTIALDLGYENVSAFID
MFRRALGTTPGKYGELARRSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=237, Percent_Identity=32.0675105485232, Blast_Score=124, Evalue=4e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28394; Mature: 28263

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPLLPARLVLSDDGPFVAAAVLTQRDARTTAPHAHARGQLVGALSGLLSIGLDDQDWV
CCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
VPAIHAIWIPPHCRHGLQSFGPFSGWSVFVAEARCGALPSEPRAIRTTPLLREAVRRAAT
HHHHHHEECCHHHHHHHHHCCCCCCHHEEEEHHHHCCCCCCCCCHHCCHHHHHHHHHHHC
WDGSALDAAQTRIGEVIVDEIAAADAQSLGLVRPRDPRLVRITDALAADLADNRRLEDWA
CCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCEEEEHHHHHHHHHCCCCHHHHH
RWAGLGARTLSRRFVAETGLTFAQWRQQARLMRALEKVADGVPVTTIALDLGYENVSAFI
HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
DMFRRALGTTPGKYGELARRSP
HHHHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure 
SAPLLPARLVLSDDGPFVAAAVLTQRDARTTAPHAHARGQLVGALSGLLSIGLDDQDWV
CCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
VPAIHAIWIPPHCRHGLQSFGPFSGWSVFVAEARCGALPSEPRAIRTTPLLREAVRRAAT
HHHHHHEECCHHHHHHHHHCCCCCCHHEEEEHHHHCCCCCCCCCHHCCHHHHHHHHHHHC
WDGSALDAAQTRIGEVIVDEIAAADAQSLGLVRPRDPRLVRITDALAADLADNRRLEDWA
CCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCEEEEHHHHHHHHHCCCCHHHHH
RWAGLGARTLSRRFVAETGLTFAQWRQQARLMRALEKVADGVPVTTIALDLGYENVSAFI
HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
DMFRRALGTTPGKYGELARRSP
HHHHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]