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The map label for this gene is cph2 [H]

Identifier: 189352591

GI number: 189352591

Start: 670783

End: 672261

Strand: Reverse

Name: cph2 [H]

Synonym: BMULJ_03822

Alternate gene names: 189352591

Gene position: 672261-670783 (Counterclockwise)

Preceding gene: 189352592

Following gene: 189352589

Centisome position: 27.18

GC content: 64.37

Gene sequence:

>1479_bases
ATGCAACCGCGCTCATCAGCGCCTCACTATGTCGTCGCCGTCGGCGTGCTGATCGCCTTCGCGCTGATGGGGCTTTGCAT
ACTCCAGCTGTTCCAGAGCCGCCAGGATGCGCTGGACAGGGCACGCGAGACTTCGCGCAATCTCGCGCTCGTCGCCGAAC
GCGACATCACGCGCAACGTCGAGCTCTACAATCTGTCGCTCGAGGCCGTCCTCCAGGGGCTTCGGCGCCCCGACGTGATG
GCGGCTTCGCCTGCGCTTCGCCGCGGCGTGCTGTTCGACCACGCGATGACGGCCCAATATCTCGGTTCGATGCTGGTCCT
CGATGCGCAGGGCAATATCGTTCTCGACTCGCAGAACGACGTGCCGCGCCACGGCAACTTCTCGGATCGAAAATATTTCA
CCGTCCACCGCGACCGCGCCGACGTGGGGCTTTACGTCAGCGATCCATTCGCATCGCGGCTGCGCGGCGGTACACCAAGC
ATCGTGCTGAGCCGTCGCGTATCGAACCCGGACGGCTCCTTCGCCGGCGTCGCATTGATCGCGATCAACCTCGAGTATTT
CCACAAGTTGTTTGCCGGGCTCGCGCTGGGTCCGCACGGATCGATTTCCCTAATCGGCACCGACGGCATCATGGTCATGC
GCCAGCCTTACGAACTGAATACGATCGGACGGGACATCAGCCAGGCCGCCACGTTCCGCCGCTTCCGAAGCGCACCCGAA
GGATCGTTTCTCGAGCGCTCGTCCATCGACGGCGTGCGCCGCCTGTATTACTTCAAGACATTGCCGAACCTGCCGCTGAT
CGTGATGGTCGCCGAGGCCGAACAGGACATTTACGCGGCATGGCATCGTCGCGCGCTCACGATCGGCGCGCTGGTCGCGA
CGTTCGGCGCTGCGTTCATCGCGCTTTCCGTATTGCTCGGCGCGCAGCTGCGGCGCAGGATGCGAGCCGAATCGGAGCTG
ATCCTGCTCGCGCGCACCGACGGGCTCACGGGTCTCAACAACCGCCGCAGCTTCGGCGAGGTGCTCGATCGCGAATGGCG
CCGCGCACGCCGGGTACGATCGGTCTTTTCGCTGCTCTTCGTCGACGTCGACCGCTTCAAGGCCTACAACGACACGTACG
GCCACCAGGCCGGCGACGATGCGCTCGCTGCAGTCGCGCGCTGCATCGGCGAGAACATTCGCCGGCCCGCGGACGTCGCC
GCCCGCTACGGCGGCGAAGAGTTCGTCGTCCTGCTGCCCGATACGGCGGAGAACGGCGCCGCGCAGATTGCCGAACGGAT
TCGAATCGCCATCAACGAACTGGGCCTCGAACATGTCGGCAGCGAGTTCGGACGCGTCACCGCGAGCATCGGCCTGGCGA
GCTGGAAACCCGATCAGGACGTCGAACCCGACGCGATCATCAAGGCTGCCGACGAAGCGCTTTATTACGCGAAAGCGACG
GGACGCAACAAGGTCACGCAATTCGAACCGACTGCCTGA

Upstream 100 bases:

>100_bases
GGTCGCCCGGGCTTGCGCAGCACCCGCCCCTTTTTTAGTATGTGGAAAAGCGAATTGAATAATATAGGCGCTCGTGCGCC
GCTCTAGAACGAGGAAACGG

Downstream 100 bases:

>100_bases
GCGACCGGCCGCCGACAAGTGCTGCAGCGGCCCGCGCGTGTCCGGCCGTTGCGGTCGTCGGTGGCGGACGATCGTGCGAC
GGCCGCTGCGCCGTCGTCGA

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MQPRSSAPHYVVAVGVLIAFALMGLCILQLFQSRQDALDRARETSRNLALVAERDITRNVELYNLSLEAVLQGLRRPDVM
AASPALRRGVLFDHAMTAQYLGSMLVLDAQGNIVLDSQNDVPRHGNFSDRKYFTVHRDRADVGLYVSDPFASRLRGGTPS
IVLSRRVSNPDGSFAGVALIAINLEYFHKLFAGLALGPHGSISLIGTDGIMVMRQPYELNTIGRDISQAATFRRFRSAPE
GSFLERSSIDGVRRLYYFKTLPNLPLIVMVAEAEQDIYAAWHRRALTIGALVATFGAAFIALSVLLGAQLRRRMRAESEL
ILLARTDGLTGLNNRRSFGEVLDREWRRARRVRSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADVA
ARYGGEEFVVLLPDTAENGAAQIAERIRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKAADEALYYAKAT
GRNKVTQFEPTA

Sequences:

>Translated_492_residues
MQPRSSAPHYVVAVGVLIAFALMGLCILQLFQSRQDALDRARETSRNLALVAERDITRNVELYNLSLEAVLQGLRRPDVM
AASPALRRGVLFDHAMTAQYLGSMLVLDAQGNIVLDSQNDVPRHGNFSDRKYFTVHRDRADVGLYVSDPFASRLRGGTPS
IVLSRRVSNPDGSFAGVALIAINLEYFHKLFAGLALGPHGSISLIGTDGIMVMRQPYELNTIGRDISQAATFRRFRSAPE
GSFLERSSIDGVRRLYYFKTLPNLPLIVMVAEAEQDIYAAWHRRALTIGALVATFGAAFIALSVLLGAQLRRRMRAESEL
ILLARTDGLTGLNNRRSFGEVLDREWRRARRVRSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADVA
ARYGGEEFVVLLPDTAENGAAQIAERIRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKAADEALYYAKAT
GRNKVTQFEPTA
>Mature_492_residues
MQPRSSAPHYVVAVGVLIAFALMGLCILQLFQSRQDALDRARETSRNLALVAERDITRNVELYNLSLEAVLQGLRRPDVM
AASPALRRGVLFDHAMTAQYLGSMLVLDAQGNIVLDSQNDVPRHGNFSDRKYFTVHRDRADVGLYVSDPFASRLRGGTPS
IVLSRRVSNPDGSFAGVALIAINLEYFHKLFAGLALGPHGSISLIGTDGIMVMRQPYELNTIGRDISQAATFRRFRSAPE
GSFLERSSIDGVRRLYYFKTLPNLPLIVMVAEAEQDIYAAWHRRALTIGALVATFGAAFIALSVLLGAQLRRRMRAESEL
ILLARTDGLTGLNNRRSFGEVLDREWRRARRVRSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADVA
ARYGGEEFVVLLPDTAENGAAQIAERIRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKAADEALYYAKAT
GRNKVTQFEPTA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=38.0434782608696, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=39.3939393939394, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082007, Length=232, Percent_Identity=35.7758620689655, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=40.3614457831325, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=35.0282485875706, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=167, Percent_Identity=38.9221556886228, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=191, Percent_Identity=32.9842931937173, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=37.2670807453416, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=33.5329341317365, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87081977, Length=199, Percent_Identity=32.6633165829146, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788085, Length=210, Percent_Identity=30.4761904761905, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788956, Length=203, Percent_Identity=31.0344827586207, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 54292; Mature: 54292

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPRSSAPHYVVAVGVLIAFALMGLCILQLFQSRQDALDRARETSRNLALVAERDITRNV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCE
ELYNLSLEAVLQGLRRPDVMAASPALRRGVLFDHAMTAQYLGSMLVLDAQGNIVLDSQND
EEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCC
VPRHGNFSDRKYFTVHRDRADVGLYVSDPFASRLRGGTPSIVLSRRVSNPDGSFAGVALI
CCCCCCCCCCEEEEEECCCCCEEEEECCCHHHHHCCCCCCEEEEEECCCCCCCCCEEEEE
AINLEYFHKLFAGLALGPHGSISLIGTDGIMVMRQPYELNTIGRDISQAATFRRFRSAPE
EEEHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
GSFLERSSIDGVRRLYYFKTLPNLPLIVMVAEAEQDIYAAWHRRALTIGALVATFGAAFI
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSVLLGAQLRRRMRAESELILLARTDGLTGLNNRRSFGEVLDREWRRARRVRSVFSLLF
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADVAARYGGEEFVVLLPDTAENGA
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCHH
AQIAERIRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKAADEALYYAKAT
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEECC
GRNKVTQFEPTA
CCCCCCCCCCCC
>Mature Secondary Structure
MQPRSSAPHYVVAVGVLIAFALMGLCILQLFQSRQDALDRARETSRNLALVAERDITRNV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCE
ELYNLSLEAVLQGLRRPDVMAASPALRRGVLFDHAMTAQYLGSMLVLDAQGNIVLDSQND
EEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCC
VPRHGNFSDRKYFTVHRDRADVGLYVSDPFASRLRGGTPSIVLSRRVSNPDGSFAGVALI
CCCCCCCCCCEEEEEECCCCCEEEEECCCHHHHHCCCCCCEEEEEECCCCCCCCCEEEEE
AINLEYFHKLFAGLALGPHGSISLIGTDGIMVMRQPYELNTIGRDISQAATFRRFRSAPE
EEEHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
GSFLERSSIDGVRRLYYFKTLPNLPLIVMVAEAEQDIYAAWHRRALTIGALVATFGAAFI
CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSVLLGAQLRRRMRAESELILLARTDGLTGLNNRRSFGEVLDREWRRARRVRSVFSLLF
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADVAARYGGEEFVVLLPDTAENGA
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCHH
AQIAERIRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKAADEALYYAKAT
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEEECC
GRNKVTQFEPTA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]