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The map label for this gene is potC [H]

Identifier: 189352238

GI number: 189352238

Start: 279125

End: 279919

Strand: Reverse

Name: potC [H]

Synonym: BMULJ_03456

Alternate gene names: 189352238

Gene position: 279919-279125 (Counterclockwise)

Preceding gene: 189352239

Following gene: 189352237

Centisome position: 11.32

GC content: 66.29

Gene sequence:

>795_bases
ATGAGAAAGAACGGCCCGTTCGCGCTTGCGTTCCATACGCTCGTGATCCTGTTCGTGCTCGCGCCGCTCGCGATCGTCGT
GCTGGTCGCCTTCACGCCCGACGAAACGCTGACGCTGCCGACGCACGGCCTGTCGCTGCGCTGGTTCCGCGCAATTCTCG
ACTACCCCGACTTCGTCACCGCGTTCGCGAACAGCGTGAAGCTCGCGTTCGCGTCGGCGACGCTGTCGCTCGCGATCGCG
CTGCCCGCCGGGCTCGCGATCGGCCGTGCCACGTTTCCCGGCCGCGCGTTCCTGAACGGATTGCTGCTGTCGCCGCTCGT
GATTCCCGGCCTCGTGCTCGGCATCGCGCTGCTGCGGTTTTTCGCGCTGATCGGCGCGACCGGCTCGTTCGCGTGGCTCG
TGGTCGCGCACATGATCGTGATCACGCCGTTCGTGATGCGTCTCGTGCTCGCGTCGGTCGCCGGCCTCGACCGCAGCGTC
GAACAGGCCGCGTGCTCGCTCGGCGCCGATCCGTGGACGACGTTTCGCCGCATCACGCTGCCGATGATCGTGCCCGGCAT
CACCGGCGGCTGGCTGCTCGCGTTCATCAACAGCTTCGACGAGCTGACGATGTCGATCTTCGTCACGTCGCCGCAGACGG
TCACGCTGCCGGTGCGCATGTACATGTACGCGACCGAATCGATCGACCCGATGATGGCGTCGGTATCGGCGCTCGTCATC
TTCATTACCGCCGGCGCGATGCTGCTGCTCGATCGCGTCTACGGCCTGAACCGCATCCTGATCGGCCAACACTGA

Upstream 100 bases:

>100_bases
CGATCGCGGTGCTGCTGCTCGTCGCGAACCTCGTCGTGATGCTCACCTACTACCGCGTGCTCGAACGCCGCTACGCGCGC
AGCCTCGGAGGCGCTTCCCG

Downstream 100 bases:

>100_bases
TGTCCATTCCCGCTTCCCGTTCCCTCGATGCCGCGGACGACGGCGCACAGTTCGTGCGCCTCGCCGAACGCGACCGCGCG
CGCATCGCGTTCACGCTCGA

Product: spermidine/putrescine transport system permease protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MRKNGPFALAFHTLVILFVLAPLAIVVLVAFTPDETLTLPTHGLSLRWFRAILDYPDFVTAFANSVKLAFASATLSLAIA
LPAGLAIGRATFPGRAFLNGLLLSPLVIPGLVLGIALLRFFALIGATGSFAWLVVAHMIVITPFVMRLVLASVAGLDRSV
EQAACSLGADPWTTFRRITLPMIVPGITGGWLLAFINSFDELTMSIFVTSPQTVTLPVRMYMYATESIDPMMASVSALVI
FITAGAMLLLDRVYGLNRILIGQH

Sequences:

>Translated_264_residues
MRKNGPFALAFHTLVILFVLAPLAIVVLVAFTPDETLTLPTHGLSLRWFRAILDYPDFVTAFANSVKLAFASATLSLAIA
LPAGLAIGRATFPGRAFLNGLLLSPLVIPGLVLGIALLRFFALIGATGSFAWLVVAHMIVITPFVMRLVLASVAGLDRSV
EQAACSLGADPWTTFRRITLPMIVPGITGGWLLAFINSFDELTMSIFVTSPQTVTLPVRMYMYATESIDPMMASVSALVI
FITAGAMLLLDRVYGLNRILIGQH
>Mature_264_residues
MRKNGPFALAFHTLVILFVLAPLAIVVLVAFTPDETLTLPTHGLSLRWFRAILDYPDFVTAFANSVKLAFASATLSLAIA
LPAGLAIGRATFPGRAFLNGLLLSPLVIPGLVLGIALLRFFALIGATGSFAWLVVAHMIVITPFVMRLVLASVAGLDRSV
EQAACSLGADPWTTFRRITLPMIVPGITGGWLLAFINSFDELTMSIFVTSPQTVTLPVRMYMYATESIDPMMASVSALVI
FITAGAMLLLDRVYGLNRILIGQH

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=219, Percent_Identity=28.310502283105, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787081, Length=244, Percent_Identity=30.327868852459, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787714, Length=230, Percent_Identity=32.6086956521739, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1786980, Length=190, Percent_Identity=34.7368421052632, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788764, Length=172, Percent_Identity=28.4883720930233, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28405; Mature: 28405

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNGPFALAFHTLVILFVLAPLAIVVLVAFTPDETLTLPTHGLSLRWFRAILDYPDFVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHCCCHHHH
AFANSVKLAFASATLSLAIALPAGLAIGRATFPGRAFLNGLLLSPLVIPGLVLGIALLRF
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALIGATGSFAWLVVAHMIVITPFVMRLVLASVAGLDRSVEQAACSLGADPWTTFRRITL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
PMIVPGITGGWLLAFINSFDELTMSIFVTSPQTVTLPVRMYMYATESIDPMMASVSALVI
HHHCCCCCHHHHHHHHHHHHHHEEEEEEECCCEEEEEHHEEEEECCCCCHHHHHHHHHHH
FITAGAMLLLDRVYGLNRILIGQH
HHHHHHHHHHHHHHCCCEEEECCC
>Mature Secondary Structure
MRKNGPFALAFHTLVILFVLAPLAIVVLVAFTPDETLTLPTHGLSLRWFRAILDYPDFVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHCCCHHHH
AFANSVKLAFASATLSLAIALPAGLAIGRATFPGRAFLNGLLLSPLVIPGLVLGIALLRF
HHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALIGATGSFAWLVVAHMIVITPFVMRLVLASVAGLDRSVEQAACSLGADPWTTFRRITL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
PMIVPGITGGWLLAFINSFDELTMSIFVTSPQTVTLPVRMYMYATESIDPMMASVSALVI
HHHCCCCCHHHHHHHHHHHHHHEEEEEEECCCEEEEEHHEEEEECCCCCHHHHHHHHHHH
FITAGAMLLLDRVYGLNRILIGQH
HHHHHHHHHHHHHHCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]