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The map label for this gene is ydfH [H]

Identifier: 189352034

GI number: 189352034

Start: 50069

End: 50791

Strand: Reverse

Name: ydfH [H]

Synonym: BMULJ_03251

Alternate gene names: 189352034

Gene position: 50791-50069 (Counterclockwise)

Preceding gene: 189352035

Following gene: 189352027

Centisome position: 2.05

GC content: 62.52

Gene sequence:

>723_bases
ATGAAGGGTGGCGTGATGAGCAAAGAGGCTCCTGAATCGGAAGGTGGCGGTCGCCGGCACGGCGGGCGGTATGTGTATGA
GGAATTGCGCAAACAGATCCTGACGCTCAAGCTGAAACCCGGCGTGCAGCTCGACGAAATCTCGCTGGCCGCACAGTTCG
GGCTGTCGCGCTCGCCGGTGCGCGACGCGATCGCACGGCTGAGCAGCGAAGGGCTCGTCACGATCCTGCCGAACCGGACC
ACGCTCGTCACGCCGTTCGAGATCGAGGAATTTCCGAAGTACATCTCGGCGCTCGACCTGATCCAGCGCGCGGTCACGCG
TCTCGCGGCCACGCAGCGCACCGATGCGGACCTCGCGAAAATCCGCAAGGCGGACGACGTTTACATGGAGGCCGTCGCGA
GCGGCGATTTCCAGGCGATGTCGGAGACCAACAAGGCGCTCCACATGGCGATCGCGCATGCCGCCAACAATCCGTATTTC
GTCGGCTACTACGAACGCCTGCTCGGCGAAGGGCAGCGCCTGCTTCATCTGCATTTCGATTTCACCGTGAGTTCGCCCAC
GGCCGCGAAGCTCGGCCGCGACCACGACGAACTGATCGACGCGATTGCGCGCCGCGACGCAGACGCCGCCGAAAAAGCCG
CGCACGAACACACGATGTTGTTCCAGAAGCGCTTCCTCGACTACATGAAGCAGAACCTCACCGAATCGATGTCGGTTCTG
TAA

Upstream 100 bases:

>100_bases
AGCGATACGTGGGGCGACGGCTTCGACTCTTCGGCGACGTCAGGCACGTGAGGCGGCGATGCTAAACTCGCGAGCGCGCT
CGGCGATCCGGGCCGATGAC

Downstream 100 bases:

>100_bases
GCGCGCCTGTCACCCCATATCGCGCATCAACTCCGCGAGCCGCTCGCGCAGCCACCGGTTCGCCTGATCCTGATCCGCGC
TGCGATGCCAGTAGCAGAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKGGVMSKEAPESEGGGRRHGGRYVYEELRKQILTLKLKPGVQLDEISLAAQFGLSRSPVRDAIARLSSEGLVTILPNRT
TLVTPFEIEEFPKYISALDLIQRAVTRLAATQRTDADLAKIRKADDVYMEAVASGDFQAMSETNKALHMAIAHAANNPYF
VGYYERLLGEGQRLLHLHFDFTVSSPTAAKLGRDHDELIDAIARRDADAAEKAAHEHTMLFQKRFLDYMKQNLTESMSVL

Sequences:

>Translated_240_residues
MKGGVMSKEAPESEGGGRRHGGRYVYEELRKQILTLKLKPGVQLDEISLAAQFGLSRSPVRDAIARLSSEGLVTILPNRT
TLVTPFEIEEFPKYISALDLIQRAVTRLAATQRTDADLAKIRKADDVYMEAVASGDFQAMSETNKALHMAIAHAANNPYF
VGYYERLLGEGQRLLHLHFDFTVSSPTAAKLGRDHDELIDAIARRDADAAEKAAHEHTMLFQKRFLDYMKQNLTESMSVL
>Mature_240_residues
MKGGVMSKEAPESEGGGRRHGGRYVYEELRKQILTLKLKPGVQLDEISLAAQFGLSRSPVRDAIARLSSEGLVTILPNRT
TLVTPFEIEEFPKYISALDLIQRAVTRLAATQRTDADLAKIRKADDVYMEAVASGDFQAMSETNKALHMAIAHAANNPYF
VGYYERLLGEGQRLLHLHFDFTVSSPTAAKLGRDHDELIDAIARRDADAAEKAAHEHTMLFQKRFLDYMKQNLTESMSVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=196, Percent_Identity=26.530612244898, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87081914, Length=202, Percent_Identity=28.2178217821782, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26764; Mature: 26764

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGGVMSKEAPESEGGGRRHGGRYVYEELRKQILTLKLKPGVQLDEISLAAQFGLSRSPV
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCCHH
RDAIARLSSEGLVTILPNRTTLVTPFEIEEFPKYISALDLIQRAVTRLAATQRTDADLAK
HHHHHHHCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IRKADDVYMEAVASGDFQAMSETNKALHMAIAHAANNPYFVGYYERLLGEGQRLLHLHFD
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCEEEEEEEE
FTVSSPTAAKLGRDHDELIDAIARRDADAAEKAAHEHTMLFQKRFLDYMKQNLTESMSVL
EEECCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGGVMSKEAPESEGGGRRHGGRYVYEELRKQILTLKLKPGVQLDEISLAAQFGLSRSPV
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCCHH
RDAIARLSSEGLVTILPNRTTLVTPFEIEEFPKYISALDLIQRAVTRLAATQRTDADLAK
HHHHHHHCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IRKADDVYMEAVASGDFQAMSETNKALHMAIAHAANNPYFVGYYERLLGEGQRLLHLHFD
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCEEEEEEEE
FTVSSPTAAKLGRDHDELIDAIARRDADAAEKAAHEHTMLFQKRFLDYMKQNLTESMSVL
EEECCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]