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The map label for this gene is prdF

Identifier: 189352035

GI number: 189352035

Start: 50841

End: 51887

Strand: Reverse

Name: prdF

Synonym: BMULJ_03252

Alternate gene names: NA

Gene position: 51887-50841 (Counterclockwise)

Preceding gene: 189352036

Following gene: 189352034

Centisome position: 2.1

GC content: 67.72

Gene sequence:

>1047_bases
ATGCGCTGGAAGAAAACGCTGCAACTCGTCGACGTGCATTGCGAAGGCGAGATCGGCAAGGTCGTCACGGGCGGGGTGCT
CGACATTCCCGGCCAGACCATGCTGGAGAAGATGAACTACCTGAACGAGACCGACGACAGCCTGCGGCGCCTTGTCGTGC
TCGAACCGCGCGGCTGCCTGCAGATGTCGGTGAACCTGCTGCTGCCGCCGACGCGACCCGAAGCGCATGCCGGATTCATC
GTGCTGCAGGCCGACAAGGCGCATCCGATGTCGGGCAGTAACTGCATCTGCGTCGTTACCGCGCTGCTCGAACTCGGCAT
GGTGCCGATGCAGGAACCTGAAACCACCGTCGTACTCGACACGCCGGCCGGGCTCGTCACTGCGCGAGCCACCTGCCGCG
ACGGCCGCTGCGTCGGCGTCTCGCTCGACATGGTGCCGTCGTTCGTCGAACAGCTCGACGTCGACGTGCACACGCCGGAA
TTCGGCACGCTCCCGGTCGATATTGCGTTCGGCGGCGTGTACTACGCGCTTGTCGATGTCGACCGGATCGGGCTCTCGAT
CGCGCCGGACAACGCGCGGCAACTCGCGACGCACGGCGTGCGACTCAGGGAGATCATCAACCGCCAGGTGAGCGTGCAGC
ATCCGCTGTACCCCGAGATCAACGAGGTCGCGTACGTGATGTTCCGCCACCGCGTCGACGACACCGTCTACCAAACCTGC
ACGACCCTGCCGCCCGGCCGCGTCGACCGCTCGCCGTGCGGCACCGGCAGCTCGGCCAACCTCGCGACGCTGGCCGCGCG
CGGGCGCGTGCACGTGGGCGACTGCCTGACCTCGCGTTCGACGATCGGCGGCGAATTCCGCGTCGAGATGCTCGGCACGA
CCGAGGTCGGCGGCCGGCCGGCCGTGCTGCCGCGCGTCACCGGCCGCGCGTGGGTGTTCGGGTTCCAGCAGCTCGGCGTC
GATCCGGACGATCCGCTCGCCGCGGGATTCTTGCTCAGCGATACGTGGGGCGACGGCTTCGACTCTTCGGCGACGTCAGG
CACGTGA

Upstream 100 bases:

>100_bases
CGGCGAGTGGGGCCTCAACAATTACCTCGAAATCAAGCAGATCACGCGCTACGACAGCGACACGCCGTGGGGCTGGTACA
TCAAGTAAGGTGAAGCGATC

Downstream 100 bases:

>100_bases
GGCGGCGATGCTAAACTCGCGAGCGCGCTCGGCGATCCGGGCCGATGACATGAAGGGTGGCGTGATGAGCAAAGAGGCTC
CTGAATCGGAAGGTGGCGGT

Product: proline racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRWKKTLQLVDVHCEGEIGKVVTGGVLDIPGQTMLEKMNYLNETDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAHAGFI
VLQADKAHPMSGSNCICVVTALLELGMVPMQEPETTVVLDTPAGLVTARATCRDGRCVGVSLDMVPSFVEQLDVDVHTPE
FGTLPVDIAFGGVYYALVDVDRIGLSIAPDNARQLATHGVRLREIINRQVSVQHPLYPEINEVAYVMFRHRVDDTVYQTC
TTLPPGRVDRSPCGTGSSANLATLAARGRVHVGDCLTSRSTIGGEFRVEMLGTTEVGGRPAVLPRVTGRAWVFGFQQLGV
DPDDPLAAGFLLSDTWGDGFDSSATSGT

Sequences:

>Translated_348_residues
MRWKKTLQLVDVHCEGEIGKVVTGGVLDIPGQTMLEKMNYLNETDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAHAGFI
VLQADKAHPMSGSNCICVVTALLELGMVPMQEPETTVVLDTPAGLVTARATCRDGRCVGVSLDMVPSFVEQLDVDVHTPE
FGTLPVDIAFGGVYYALVDVDRIGLSIAPDNARQLATHGVRLREIINRQVSVQHPLYPEINEVAYVMFRHRVDDTVYQTC
TTLPPGRVDRSPCGTGSSANLATLAARGRVHVGDCLTSRSTIGGEFRVEMLGTTEVGGRPAVLPRVTGRAWVFGFQQLGV
DPDDPLAAGFLLSDTWGDGFDSSATSGT
>Mature_348_residues
MRWKKTLQLVDVHCEGEIGKVVTGGVLDIPGQTMLEKMNYLNETDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAHAGFI
VLQADKAHPMSGSNCICVVTALLELGMVPMQEPETTVVLDTPAGLVTARATCRDGRCVGVSLDMVPSFVEQLDVDVHTPE
FGTLPVDIAFGGVYYALVDVDRIGLSIAPDNARQLATHGVRLREIINRQVSVQHPLYPEINEVAYVMFRHRVDDTVYQTC
TTLPPGRVDRSPCGTGSSANLATLAARGRVHVGDCLTSRSTIGGEFRVEMLGTTEVGGRPAVLPRVTGRAWVFGFQQLGV
DPDDPLAAGFLLSDTWGDGFDSSATSGT

Specific function: Unknown

COG id: COG3938

COG function: function code E; Proline racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline racemase family [H]

Homologues:

Organism=Homo sapiens, GI21389361, Length=335, Percent_Identity=31.044776119403, Blast_Score=154, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008794 [H]

Pfam domain/function: PF05544 Pro_racemase [H]

EC number: NA

Molecular weight: Translated: 37567; Mature: 37567

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWKKTLQLVDVHCEGEIGKVVTGGVLDIPGQTMLEKMNYLNETDDSLRRLVVLEPRGCL
CCHHHEEEEEEEEECCCCCCEEECCEEECCCHHHHHHHHHCCCCCCHHEEEEEECCCCCE
QMSVNLLLPPTRPEAHAGFIVLQADKAHPMSGSNCICVVTALLELGMVPMQEPETTVVLD
EEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
TPAGLVTARATCRDGRCVGVSLDMVPSFVEQLDVDVHTPEFGTLPVDIAFGGVYYALVDV
CCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHCCEEECCCCCCEEEEEEECCEEEEEEEH
DRIGLSIAPDNARQLATHGVRLREIINRQVSVQHPLYPEINEVAYVMFRHRVDDTVYQTC
HHHCEEECCCCHHHHHHCCHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCHHHHHHH
TTLPPGRVDRSPCGTGSSANLATLAARGRVHVGDCLTSRSTIGGEFRVEMLGTTEVGGRP
CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEHHHHCCCCCCCCEEEEEEEECCCCCCCC
AVLPRVTGRAWVFGFQQLGVDPDDPLAAGFLLSDTWGDGFDSSATSGT
CCCEECCCCEEEEEHHHHCCCCCCCCEECEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWKKTLQLVDVHCEGEIGKVVTGGVLDIPGQTMLEKMNYLNETDDSLRRLVVLEPRGCL
CCHHHEEEEEEEEECCCCCCEEECCEEECCCHHHHHHHHHCCCCCCHHEEEEEECCCCCE
QMSVNLLLPPTRPEAHAGFIVLQADKAHPMSGSNCICVVTALLELGMVPMQEPETTVVLD
EEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
TPAGLVTARATCRDGRCVGVSLDMVPSFVEQLDVDVHTPEFGTLPVDIAFGGVYYALVDV
CCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHCCEEECCCCCCEEEEEEECCEEEEEEEH
DRIGLSIAPDNARQLATHGVRLREIINRQVSVQHPLYPEINEVAYVMFRHRVDDTVYQTC
HHHCEEECCCCHHHHHHCCHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCHHHHHHH
TTLPPGRVDRSPCGTGSSANLATLAARGRVHVGDCLTSRSTIGGEFRVEMLGTTEVGGRP
CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEHHHHCCCCCCCCEEEEEEEECCCCCCCC
AVLPRVTGRAWVFGFQQLGVDPDDPLAAGFLLSDTWGDGFDSSATSGT
CCCEECCCCEEEEEHHHHCCCCCCCCEECEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]