| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is traG [H]
Identifier: 189184737
GI number: 189184737
Start: 1859697
End: 1862324
Strand: Direct
Name: traG [H]
Synonym: OTT_1830
Alternate gene names: 189184737
Gene position: 1859697-1862324 (Clockwise)
Preceding gene: 189184736
Following gene: 189184738
Centisome position: 92.57
GC content: 35.08
Gene sequence:
>2628_bases ATGGATTACGTAATACATACATTTGGTGGTGGAGATTTGTTGTGGCATGTGTTTAACGGCATAGGCAGAGTATTTGCTTC AAATAGTGAATACTTTACTCCTGTAGGCCACTTAGCCTTGACTATTGGTGGCATATGGGCTGCTACTAGGGCTATTTTTA GAGGAAATATCGGCATCTTTGCTATGGAATGGTTTTTTCCATCGATATTTATTTTTACGCTGTTATTTGCCCCCAAATCT ACTGTTTGGCTGAAGGATGAAGTATCAATGAGTGCGCCAGTGAAGGTTGATAACATTCCTATAGGTATTGCAATGTTTGC TTCTCTTTCCTCGCAAACGAGTTACTTTGTATCCAAAATGTTGGAAAATCATCTTTTACCGGCTTATGAAGGACTATCGA GCAGAAAAACTGGTATTATGTTTGGAGCTAAGGCTGTAGCTAAGATTCGAGATGTACAAATACAGGATCCAATAACTTTA ACTAATACGAAAGAATTTCTTAGACAATGCTTTATGAAACCTTACATCATAGGTAATATTCTAGGCAAGAAAGCTGCTGC TCAACAAACTAACGACATTATAGGATTTATCGAGCAAAATATACCTAATAATTTTGGTATTTATTATAAAGATCATAGTA ATTTAGCTATTAGTTTCAAGACCTGTAGACAAGCTACTCCATTAATTAAAGCAGCAATTCATAAAGAATTAAATGAAGGG CTTCTAACAAAGTTCGCAGCAGCGATTGGAGTTCAATCTGATCAGTCAAACATGTTAAGTCAAAGACTAAAAGTTATGAC TGGAGATACACTAAAATATCTACAAAGAGAGCAACAAGACATTCACGAATGGATGAAGCAAGCGATGTTACTTAATGCTA ATCGTGAGTCATATGATGACTGGCGGGAGAAGTTTTCATTATCACGAATTTATCCCAATTTAGTTAGTATGCATGCAATC AGAGGACTTTTTCAACAGTCATTTTCGTATCTAGTAGCTGGAGAAATGGCTGCTCACATGATGCCGATTTTACAATCTGT ATTTTTTGCATTAGTAGTCTCAATGATCTTTATTGTATTTCCAATGGGCTTACTGCCTGGTGGATACAATATATTAAAGA CCTGGATTCTATTAATAATATGGGTCAGCAGCTGGCCAGTATTTTTTACAATAATCCATTGCCTAGGAATGATCAGCTTA TCCAGTAAATCTGGAGCTTTCGGTAGTGATTATGGGCTGAATATGCTATCGCAAGGAAGCTTTGCAGAGATGATTTTATA TAGCTATGCGACATTTCAAATGCTTGCATCATCAATACCAATGCTTTCTTGGGCAGTGATAAAAGCTTGCGCTCATGCTA CAGCTAACTTAGCAAGCCAGTTCTCTCCTATACCAGTTGCTAGCAGCTTAGGAAGTAATATAGTCGACAATAACTTGAGT ATGGATAATTACAGCATAGGCAATAGAACTATTTCTCAACAAAACCTAGCTCCTTCATTAGATATGAGTGCTAGTATTAA TGATGGTAGTATAAAAGTCACTACAACGGATGATGGTCGACAAATTATAAATAAAAACGTAGATTCATTATTAGATAACT ACCGCTCTTCTGTACTGCTACAATCTGGATATCAAAACCAGTTTGTGCGTTCACAGAGCAGGCTTAATTCACTAACTAAA AGAGAGGCCGATCTTATTTCAACAGGAAACTCTATGGCCATGGAAATAGGACAAAGACTAACTCACGATGAAATTCGTTC TATAGGCCTAACTGAGAGTGAATCCCAAGCTCTGCAAATTGTTAGTTCCGATAGTGAATCCTTTAGTCAGCATACAGGTA GTAGCCACAGTAAAAGTAGTAGTACTAGTACTAGTGCTGGAGGTGGGGTGTGGGGATTTAATACTACAGTTTCAGGAGGC CGAAGACATAATAATGAACAAGGCAACTCAGTAAATCAGCAACAATCGCATAGTGAAGCATTATCAAAAATTCAGAGTGC AGTTAGAGAAGAAAGATTTAGTAGTACAAATAGTGAGGTGCAGTCATTAAGTGAGAATCTGAATGCTAACCTTTCTGAGC AGAAATCAATTGGGCAAGAAATAGCTCAAACTAAACAAGAAATGGAGCAACTTAGTCATAGTATGAACTATGTATCTCAA AACTCTATCACTATTGATCGTAACATCAATGAACTTGTATTAAATGAAATTATTGCTCAAAATCCTGAAATAAGAAGCAA GGAGCAAGCAGCTAGATGGATAATGTATCACTCGGCTGAAGCAGAAAAAATTGCTTTTGAGGTTGCTCAAATCAACAATG AAGTACCTAAAAATTTGAATGATTTTAATGATGATAATTTTTTGAATAAACAAGATCTACAAGAAATTTTTAATAAAAAA TCTGAAGAGTTAAAAGGTCAAAACGTCAATTATAGCAATGATAAGGCTTATAATAAGAATATAGAACAAACTTTTAGTAA TAATAAAAAAATAAAGAATCTTGATCAAGTTTCTGATAGTATTAAGGATAAGACTAAAGAAATACAGGATGAATTTAATA ATACTTCTAATTCAGCAGTTATTTTAACTGTCAAACAAGCAGTAAAAAATTTAAAGGATAATAAATGA
Upstream 100 bases:
>100_bases TTGCAAATGAGAAATGGACTAGCCTACAAACCGATGCAAGTCGAATAGATAAAAGGGCTAGATTAATAGAACAACATTTA ATGGCGAAGGAGAGAAGCTA
Downstream 100 bases:
>100_bases TTAGTAATTAATATGAAAAACGTGTGTAAAAAATTAGCCATTATTTTATCATTAATATTATTAAATACAGCAGCTGTTGC AGCAGAGCAAAGCATACAAC
Product: putative conjugative transfer protein TraG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 875; Mature: 875
Protein sequence:
>875_residues MDYVIHTFGGGDLLWHVFNGIGRVFASNSEYFTPVGHLALTIGGIWAATRAIFRGNIGIFAMEWFFPSIFIFTLLFAPKS TVWLKDEVSMSAPVKVDNIPIGIAMFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIQDPITL TNTKEFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYKDHSNLAISFKTCRQATPLIKAAIHKELNEG LLTKFAAAIGVQSDQSNMLSQRLKVMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAI RGLFQQSFSYLVAGEMAAHMMPILQSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISL SSKSGAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPIPVASSLGSNIVDNNLS MDNYSIGNRTISQQNLAPSLDMSASINDGSIKVTTTDDGRQIINKNVDSLLDNYRSSVLLQSGYQNQFVRSQSRLNSLTK READLISTGNSMAMEIGQRLTHDEIRSIGLTESESQALQIVSSDSESFSQHTGSSHSKSSSTSTSAGGGVWGFNTTVSGG RRHNNEQGNSVNQQQSHSEALSKIQSAVREERFSSTNSEVQSLSENLNANLSEQKSIGQEIAQTKQEMEQLSHSMNYVSQ NSITIDRNINELVLNEIIAQNPEIRSKEQAARWIMYHSAEAEKIAFEVAQINNEVPKNLNDFNDDNFLNKQDLQEIFNKK SEELKGQNVNYSNDKAYNKNIEQTFSNNKKIKNLDQVSDSIKDKTKEIQDEFNNTSNSAVILTVKQAVKNLKDNK
Sequences:
>Translated_875_residues MDYVIHTFGGGDLLWHVFNGIGRVFASNSEYFTPVGHLALTIGGIWAATRAIFRGNIGIFAMEWFFPSIFIFTLLFAPKS TVWLKDEVSMSAPVKVDNIPIGIAMFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIQDPITL TNTKEFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYKDHSNLAISFKTCRQATPLIKAAIHKELNEG LLTKFAAAIGVQSDQSNMLSQRLKVMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAI RGLFQQSFSYLVAGEMAAHMMPILQSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISL SSKSGAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPIPVASSLGSNIVDNNLS MDNYSIGNRTISQQNLAPSLDMSASINDGSIKVTTTDDGRQIINKNVDSLLDNYRSSVLLQSGYQNQFVRSQSRLNSLTK READLISTGNSMAMEIGQRLTHDEIRSIGLTESESQALQIVSSDSESFSQHTGSSHSKSSSTSTSAGGGVWGFNTTVSGG RRHNNEQGNSVNQQQSHSEALSKIQSAVREERFSSTNSEVQSLSENLNANLSEQKSIGQEIAQTKQEMEQLSHSMNYVSQ NSITIDRNINELVLNEIIAQNPEIRSKEQAARWIMYHSAEAEKIAFEVAQINNEVPKNLNDFNDDNFLNKQDLQEIFNKK SEELKGQNVNYSNDKAYNKNIEQTFSNNKKIKNLDQVSDSIKDKTKEIQDEFNNTSNSAVILTVKQAVKNLKDNK >Mature_875_residues MDYVIHTFGGGDLLWHVFNGIGRVFASNSEYFTPVGHLALTIGGIWAATRAIFRGNIGIFAMEWFFPSIFIFTLLFAPKS TVWLKDEVSMSAPVKVDNIPIGIAMFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIQDPITL TNTKEFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYKDHSNLAISFKTCRQATPLIKAAIHKELNEG LLTKFAAAIGVQSDQSNMLSQRLKVMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAI RGLFQQSFSYLVAGEMAAHMMPILQSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISL SSKSGAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPIPVASSLGSNIVDNNLS MDNYSIGNRTISQQNLAPSLDMSASINDGSIKVTTTDDGRQIINKNVDSLLDNYRSSVLLQSGYQNQFVRSQSRLNSLTK READLISTGNSMAMEIGQRLTHDEIRSIGLTESESQALQIVSSDSESFSQHTGSSHSKSSSTSTSAGGGVWGFNTTVSGG RRHNNEQGNSVNQQQSHSEALSKIQSAVREERFSSTNSEVQSLSENLNANLSEQKSIGQEIAQTKQEMEQLSHSMNYVSQ NSITIDRNINELVLNEIIAQNPEIRSKEQAARWIMYHSAEAEKIAFEVAQINNEVPKNLNDFNDDNFLNKQDLQEIFNKK SEELKGQNVNYSNDKAYNKNIEQTFSNNKKIKNLDQVSDSIKDKTKEIQDEFNNTSNSAVILTVKQAVKNLKDNK
Specific function: Plays a crucial role in donor-recipient cell interactions. Required for two stages of the conjugation process:pilus biosynthesis and mating aggregate stabilization. May interact with traN [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012931 [H]
Pfam domain/function: PF07916 TraG_N [H]
EC number: NA
Molecular weight: Translated: 97537; Mature: 97537
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYVIHTFGGGDLLWHVFNGIGRVFASNSEYFTPVGHLALTIGGIWAATRAIFRGNIGIF CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE AMEWFFPSIFIFTLLFAPKSTVWLKDEVSMSAPVKVDNIPIGIAMFASLSSQTSYFVSKM HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH LENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIQDPITLTNTKEFLRQCFMKPYIIGNI HHHCCCHHHHCCCCCCCCCEEHHHHHHHHHCCEECCCEEECCHHHHHHHHHHCHHHHHHH LGKKAAAQQTNDIIGFIEQNIPNNFGIYYKDHSNLAISFKTCRQATPLIKAAIHKELNEG HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHH LLTKFAAAIGVQSDQSNMLSQRLKVMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDD HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH WREKFSLSRIYPNLVSMHAIRGLFQQSFSYLVAGEMAAHMMPILQSVFFALVVSMIFIVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGS HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCC FAEMILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPIPVASSLGSNIVDNNLS HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHCCCCC MDNYSIGNRTISQQNLAPSLDMSASINDGSIKVTTTDDGRQIINKNVDSLLDNYRSSVLL CCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHH QSGYQNQFVRSQSRLNSLTKREADLISTGNSMAMEIGQRLTHDEIRSIGLTESESQALQI HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHH VSSDSESFSQHTGSSHSKSSSTSTSAGGGVWGFNTTVSGGRRHNNEQGNSVNQQQSHSEA HHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH LSKIQSAVREERFSSTNSEVQSLSENLNANLSEQKSIGQEIAQTKQEMEQLSHSMNYVSQ HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NSITIDRNINELVLNEIIAQNPEIRSKEQAARWIMYHSAEAEKIAFEVAQINNEVPKNLN CCEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC DFNDDNFLNKQDLQEIFNKKSEELKGQNVNYSNDKAYNKNIEQTFSNNKKIKNLDQVSDS CCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCHHCCCHHHHHCCCCCHHHHHHHHHH IKDKTKEIQDEFNNTSNSAVILTVKQAVKNLKDNK HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCC >Mature Secondary Structure MDYVIHTFGGGDLLWHVFNGIGRVFASNSEYFTPVGHLALTIGGIWAATRAIFRGNIGIF CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE AMEWFFPSIFIFTLLFAPKSTVWLKDEVSMSAPVKVDNIPIGIAMFASLSSQTSYFVSKM HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH LENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIQDPITLTNTKEFLRQCFMKPYIIGNI HHHCCCHHHHCCCCCCCCCEEHHHHHHHHHCCEECCCEEECCHHHHHHHHHHCHHHHHHH LGKKAAAQQTNDIIGFIEQNIPNNFGIYYKDHSNLAISFKTCRQATPLIKAAIHKELNEG HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHH LLTKFAAAIGVQSDQSNMLSQRLKVMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDD HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH WREKFSLSRIYPNLVSMHAIRGLFQQSFSYLVAGEMAAHMMPILQSVFFALVVSMIFIVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGS HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCC FAEMILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPIPVASSLGSNIVDNNLS HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHCCCCC MDNYSIGNRTISQQNLAPSLDMSASINDGSIKVTTTDDGRQIINKNVDSLLDNYRSSVLL CCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHH QSGYQNQFVRSQSRLNSLTKREADLISTGNSMAMEIGQRLTHDEIRSIGLTESESQALQI HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHH VSSDSESFSQHTGSSHSKSSSTSTSAGGGVWGFNTTVSGGRRHNNEQGNSVNQQQSHSEA HHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH LSKIQSAVREERFSSTNSEVQSLSENLNANLSEQKSIGQEIAQTKQEMEQLSHSMNYVSQ HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NSITIDRNINELVLNEIIAQNPEIRSKEQAARWIMYHSAEAEKIAFEVAQINNEVPKNLN CCEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC DFNDDNFLNKQDLQEIFNKKSEELKGQNVNYSNDKAYNKNIEQTFSNNKKIKNLDQVSDS CCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCHHCCCHHHHHCCCCCHHHHHHHHHH IKDKTKEIQDEFNNTSNSAVILTVKQAVKNLKDNK HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1348105; 7915817 [H]