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The map label for this gene is secB

Identifier: 189184503

GI number: 189184503

Start: 1629617

End: 1630111

Strand: Direct

Name: secB

Synonym: OTT_1596

Alternate gene names: 189184503

Gene position: 1629617-1630111 (Clockwise)

Preceding gene: 189184502

Following gene: 189184504

Centisome position: 81.12

GC content: 27.68

Gene sequence:

>495_bases
ATGGTAGCAACATCAAAACCTAAATCAGAACCTAAAATAGCAGTAAAAGCACAATATGTTAAGGACTTATCATTTGAAAA
TCCTGATCCAATAAACTCATTATTTAAAATAACTGAAAAACCTAAAATTGATACTAAGTTAGATATAAATATTACTAAAT
TATCAGAAGACAATCATTTTGAAGTAGAATTAAGTACTAACGTTAGTGCCACATGTAATGATAAAAAAATATTTCATATC
GAAGTTGTATATGCTGGAATATTTCAGCTAACTAATATATCAGAGGAAGATAAAAAGTTTATATTATCAGTACGCTGCCC
AGAAATAATTTTCCCTTATGTACGACAAATTATTTCTGAATCAACTCAGAAAGGTGGATTTTTACCTTTAATGATTGATT
ATATAGACTTTGCTGAGATTATATCAAACACACAAACTACTAACAATCAGCAGGAATTAATCAAACCAGAGTTTGATGTA
AGTAATAAGCAATAA

Upstream 100 bases:

>100_bases
ATCTCGACAGATATGGAAGATATACAAAGCAAATTGGAGTAACACTTCCAACAGTATAAGTTTAAATAAGTTAATTAATC
TATTAAAAAAGATAACTAAT

Downstream 100 bases:

>100_bases
TTTACAGACATTTTATGCTTATTTTATAGCATCCAAAATATTTATTTTTGCATAGTTTTCATTGTTTTTTAAGTTTTTTA
ACTGCTATAATAGCAGAGCT

Product: protein-export protein SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MVATSKPKSEPKIAVKAQYVKDLSFENPDPINSLFKITEKPKIDTKLDINITKLSEDNHFEVELSTNVSATCNDKKIFHI
EVVYAGIFQLTNISEEDKKFILSVRCPEIIFPYVRQIISESTQKGGFLPLMIDYIDFAEIISNTQTTNNQQELIKPEFDV
SNKQ

Sequences:

>Translated_164_residues
MVATSKPKSEPKIAVKAQYVKDLSFENPDPINSLFKITEKPKIDTKLDINITKLSEDNHFEVELSTNVSATCNDKKIFHI
EVVYAGIFQLTNISEEDKKFILSVRCPEIIFPYVRQIISESTQKGGFLPLMIDYIDFAEIISNTQTTNNQQELIKPEFDV
SNKQ
>Mature_164_residues
MVATSKPKSEPKIAVKAQYVKDLSFENPDPINSLFKITEKPKIDTKLDINITKLSEDNHFEVELSTNVSATCNDKKIFHI
EVVYAGIFQLTNISEEDKKFILSVRCPEIIFPYVRQIISESTQKGGFLPLMIDYIDFAEIISNTQTTNNQQELIKPEFDV
SNKQ

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=125, Percent_Identity=31.2, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_ORITI (B3CUK7)

Other databases:

- EMBL:   AP008981
- RefSeq:   YP_001938288.1
- GeneID:   6337782
- GenomeReviews:   AP008981_GR
- KEGG:   ott:OTT_1596
- HOGENOM:   HBG294212
- OMA:   NIDVQAN
- ProtClustDB:   CLSK2325913
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18718; Mature: 18718

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVATSKPKSEPKIAVKAQYVKDLSFENPDPINSLFKITEKPKIDTKLDINITKLSEDNHF
CCCCCCCCCCCCEEEEEHHHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCEE
EVELSTNVSATCNDKKIFHIEVVYAGIFQLTNISEEDKKFILSVRCPEIIFPYVRQIISE
EEEECCCCEEEECCCEEEEEEEEEEHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
STQKGGFLPLMIDYIDFAEIISNTQTTNNQQELIKPEFDVSNKQ
HHCCCCCEEHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVATSKPKSEPKIAVKAQYVKDLSFENPDPINSLFKITEKPKIDTKLDINITKLSEDNHF
CCCCCCCCCCCCEEEEEHHHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCEE
EVELSTNVSATCNDKKIFHIEVVYAGIFQLTNISEEDKKFILSVRCPEIIFPYVRQIISE
EEEECCCCEEEECCCEEEEEEEEEEHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
STQKGGFLPLMIDYIDFAEIISNTQTTNNQQELIKPEFDVSNKQ
HHCCCCCEEHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA