| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is virB6
Identifier: 189184311
GI number: 189184311
Start: 1437129
End: 1439345
Strand: Direct
Name: virB6
Synonym: OTT_1404
Alternate gene names: NA
Gene position: 1437129-1439345 (Clockwise)
Preceding gene: 189184304
Following gene: 189184315
Centisome position: 71.54
GC content: 31.3
Gene sequence:
>2217_bases ATGATTCAACATAATTTCAGTGAATTTAATACTCGCAATTTGAACATAATGAATCAGCAAAATACATTATTCTTAAAGTT TATTGTTAGTATTATACTATTCTGCTCTGTAATTAGTTATAGTATAGCTGAATGTATAGATGCTGATGATTTTGGATTTC CTATAATTGCTATATCATCAAGATATGATGCTAAGCAGCTTACTGGACAAAAAGATAACCAAGTTGCACCTTGGGTCGAT AGTAAACTTTTAGTTAATGGGAAGCCATTGGTTATCATGGTTAAACATTGGAATTATCATGAATACGATAATGATATCAG TCATCTTTCAGCTTGGTCAGCATGGTATGGAACTAATAAAAATAAACATACGCTTTCTAACATTACAAAAAGATTTCCAG AATGTAGGTTTAGCAATAATAAAACTTTTTCTGATTCATATGATGATAATGATGATGTACCAGTTATTAATCCTCCATGT TTATTCAAACATGGTATTGGCCTTTATGCTTTGATTGCAAAGCCTGGTGTTGATCCAAACGCTAATGTTCATTCTCAATC TTATGGCATTTCAAAAAAAACTATTAATTTTCATGTAGGCCAAAACTACCTTAGCTCTCTTAATTCTACTGAGTTAGACT CAGGTTTTTTGGATACTACACCTGATGGAAATATAGTCAAAACTGGAGGATATTTTCACAAATATCAAGACCAGGAGGAT GAACAGTATGTTGGAGGAAGATTGTATTTCAAAATCCTAGATAGATTTTACGATGACAATAATGGACAATATAAGATCAT TATTAAGTCTGGTGTTGGAGATGAAAAAGATTCACCAGAAACATTTCTTATAAATATAGTTAAAGAAATGCTATTTGGTA ACAAAAAAAATCAAAATAAAAATGGAGTAATTCAAAACCTCTTTATAAACATTCTCAAAAATCCAAGCTATAAGATAGTT GTTAATCTTACTTTGATATTATTCGTTGCATTTAGTGGGCTAGCTTTCTTAATAGGTAATATTAATATGACTGCTCATGA GTTAGTACTTAGAACAGTAAAAATTTTGGTAATATCTGTTTTGCTGAATTCTGATACAGCTTGGAAATTTTTCTATAATT ATCTATTCTTTATTTTTGTAGATGGCCCTCAATTTATTATTAAGACTATCAACCAAGCAACAGCAATAGGACCAGGATCA TCAAGCATATTAGGGCTGATGATTGCTCCTCATACTTTAAAAAAGTTATTTTCAATACTATTTGTAGATTGGGGCGGGTT TATTTACATTATTTGTTACTTAATATTATTATACTATATCTTCATAATTAGCTTTAAAGCAACAGTACTATATCTTAATG CTTTAATTTTGGTTGGTATAGGAATAATTGTAGGTCCTGTTTTCCTCTGTTTTGTTTTATTTCAGTTTACTAAACCAATC TTTGAAAATTGGATTAAGCAACTAACTATATATGCTCTTCAGCCAGTGATATTATTTGCTGGCATTGCGTTTGTCGGAAT GTTTATCAGACATGAAATATATGCTTCTCTTGGTTTCAGAGTTTGTGAAGTGCCTTTTCCTCCAATTGCTAACACATTAA TAAAAATTATTAGCGGTGATAGCTCTAAAAAACAATCGCTCTTAAATTTGTGGTTTCCAGCTCAGGTACTTAAGAAAACA TTATTATTCAGTCAAAAATGCGCTAATATACCTGTGCCTGAGGATCATATTGTATATCTGGATCAAAACGCATGGAAATG CAGTGATGGAATATCTGGTAATAGCAAGCAATTAATTACTTCAACAAATTCATCAAAGGAAAAGCACTGTTCTGCATATG AATGCAAGGCAAACCGTTACGTAGAACTGCCATTTTTAGATCCTAATATCAATAAAGATAGATCTAGAATAAGAAACTTT TTTGCTGGTAACTTTGTGCAGTGGGATAGTTTATTACTACTTGCAGCCTGTGTATTTTTACTTAGTATGTTTAATGATAA TGCAATAGCACTTGCAAATTATATTAGCAGCGGAGGAGATAGATCATCAGCTAGCGAAAAATCAACTACAGCAATAGTAT CAACAGTAACTCCGCCATCACCAACAACATTCATACCAGCTGCATTTAGTAAAATTGGTCAACAACGTACCAAAAATAGT AACTCACATTCTAATTCTAATAGTAGATCTGGAATTAATACAGGCCCTAAAAAATAA
Upstream 100 bases:
>100_bases AATTCTATACACACATCATTTTGCATGAACTCACTACACAACATTAACAAATATTATTTTAGTAACAACGTTCTTTTTGA AATAAATAAAACTTTATTGT
Downstream 100 bases:
>100_bases TTTGGTTATTTTAACATAAGTTTGATATAATTAATAGATCATAGGTGAGGTAAAGAAAGGAAAAGATGATTTAAACTTAA AAAAAGTGAAACAGAAATTT
Product: type IV secretion system protein VirB6
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 738; Mature: 738
Protein sequence:
>738_residues MIQHNFSEFNTRNLNIMNQQNTLFLKFIVSIILFCSVISYSIAECIDADDFGFPIIAISSRYDAKQLTGQKDNQVAPWVD SKLLVNGKPLVIMVKHWNYHEYDNDISHLSAWSAWYGTNKNKHTLSNITKRFPECRFSNNKTFSDSYDDNDDVPVINPPC LFKHGIGLYALIAKPGVDPNANVHSQSYGISKKTINFHVGQNYLSSLNSTELDSGFLDTTPDGNIVKTGGYFHKYQDQED EQYVGGRLYFKILDRFYDDNNGQYKIIIKSGVGDEKDSPETFLINIVKEMLFGNKKNQNKNGVIQNLFINILKNPSYKIV VNLTLILFVAFSGLAFLIGNINMTAHELVLRTVKILVISVLLNSDTAWKFFYNYLFFIFVDGPQFIIKTINQATAIGPGS SSILGLMIAPHTLKKLFSILFVDWGGFIYIICYLILLYYIFIISFKATVLYLNALILVGIGIIVGPVFLCFVLFQFTKPI FENWIKQLTIYALQPVILFAGIAFVGMFIRHEIYASLGFRVCEVPFPPIANTLIKIISGDSSKKQSLLNLWFPAQVLKKT LLFSQKCANIPVPEDHIVYLDQNAWKCSDGISGNSKQLITSTNSSKEKHCSAYECKANRYVELPFLDPNINKDRSRIRNF FAGNFVQWDSLLLLAACVFLLSMFNDNAIALANYISSGGDRSSASEKSTTAIVSTVTPPSPTTFIPAAFSKIGQQRTKNS NSHSNSNSRSGINTGPKK
Sequences:
>Translated_738_residues MIQHNFSEFNTRNLNIMNQQNTLFLKFIVSIILFCSVISYSIAECIDADDFGFPIIAISSRYDAKQLTGQKDNQVAPWVD SKLLVNGKPLVIMVKHWNYHEYDNDISHLSAWSAWYGTNKNKHTLSNITKRFPECRFSNNKTFSDSYDDNDDVPVINPPC LFKHGIGLYALIAKPGVDPNANVHSQSYGISKKTINFHVGQNYLSSLNSTELDSGFLDTTPDGNIVKTGGYFHKYQDQED EQYVGGRLYFKILDRFYDDNNGQYKIIIKSGVGDEKDSPETFLINIVKEMLFGNKKNQNKNGVIQNLFINILKNPSYKIV VNLTLILFVAFSGLAFLIGNINMTAHELVLRTVKILVISVLLNSDTAWKFFYNYLFFIFVDGPQFIIKTINQATAIGPGS SSILGLMIAPHTLKKLFSILFVDWGGFIYIICYLILLYYIFIISFKATVLYLNALILVGIGIIVGPVFLCFVLFQFTKPI FENWIKQLTIYALQPVILFAGIAFVGMFIRHEIYASLGFRVCEVPFPPIANTLIKIISGDSSKKQSLLNLWFPAQVLKKT LLFSQKCANIPVPEDHIVYLDQNAWKCSDGISGNSKQLITSTNSSKEKHCSAYECKANRYVELPFLDPNINKDRSRIRNF FAGNFVQWDSLLLLAACVFLLSMFNDNAIALANYISSGGDRSSASEKSTTAIVSTVTPPSPTTFIPAAFSKIGQQRTKNS NSHSNSNSRSGINTGPKK >Mature_738_residues MIQHNFSEFNTRNLNIMNQQNTLFLKFIVSIILFCSVISYSIAECIDADDFGFPIIAISSRYDAKQLTGQKDNQVAPWVD SKLLVNGKPLVIMVKHWNYHEYDNDISHLSAWSAWYGTNKNKHTLSNITKRFPECRFSNNKTFSDSYDDNDDVPVINPPC LFKHGIGLYALIAKPGVDPNANVHSQSYGISKKTINFHVGQNYLSSLNSTELDSGFLDTTPDGNIVKTGGYFHKYQDQED EQYVGGRLYFKILDRFYDDNNGQYKIIIKSGVGDEKDSPETFLINIVKEMLFGNKKNQNKNGVIQNLFINILKNPSYKIV VNLTLILFVAFSGLAFLIGNINMTAHELVLRTVKILVISVLLNSDTAWKFFYNYLFFIFVDGPQFIIKTINQATAIGPGS SSILGLMIAPHTLKKLFSILFVDWGGFIYIICYLILLYYIFIISFKATVLYLNALILVGIGIIVGPVFLCFVLFQFTKPI FENWIKQLTIYALQPVILFAGIAFVGMFIRHEIYASLGFRVCEVPFPPIANTLIKIISGDSSKKQSLLNLWFPAQVLKKT LLFSQKCANIPVPEDHIVYLDQNAWKCSDGISGNSKQLITSTNSSKEKHCSAYECKANRYVELPFLDPNINKDRSRIRNF FAGNFVQWDSLLLLAACVFLLSMFNDNAIALANYISSGGDRSSASEKSTTAIVSTVTPPSPTTFIPAAFSKIGQQRTKNS NSHSNSNSRSGINTGPKK
Specific function: Unknown
COG id: COG3704
COG function: function code U; Type IV secretory pathway, VirB6 components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential). Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbL/virB6 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007688 [H]
Pfam domain/function: PF04610 TrbL [H]
EC number: NA
Molecular weight: Translated: 82940; Mature: 82940
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQHNFSEFNTRNLNIMNQQNTLFLKFIVSIILFCSVISYSIAECIDADDFGFPIIAISS CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC RYDAKQLTGQKDNQVAPWVDSKLLVNGKPLVIMVKHWNYHEYDNDISHLSAWSAWYGTNK CCCHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC NKHTLSNITKRFPECRFSNNKTFSDSYDDNDDVPVINPPCLFKHGIGLYALIAKPGVDPN CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCC ANVHSQSYGISKKTINFHVGQNYLSSLNSTELDSGFLDTTPDGNIVKTGGYFHKYQDQED CCCCCCCCCCCEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCC EQYVGGRLYFKILDRFYDDNNGQYKIIIKSGVGDEKDSPETFLINIVKEMLFGNKKNQNK HHHHCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC NGVIQNLFINILKNPSYKIVVNLTLILFVAFSGLAFLIGNINMTAHELVLRTVKILVISV CHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LLNSDTAWKFFYNYLFFIFVDGPQFIIKTINQATAIGPGSSSILGLMIAPHTLKKLFSIL HHCCCCHHHHHHHEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHH FVDWGGFIYIICYLILLYYIFIISFKATVLYLNALILVGIGIIVGPVFLCFVLFQFTKPI HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FENWIKQLTIYALQPVILFAGIAFVGMFIRHEIYASLGFRVCEVPFPPIANTLIKIISGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCC SSKKQSLLNLWFPAQVLKKTLLFSQKCANIPVPEDHIVYLDQNAWKCSDGISGNSKQLIT CHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEECCCCCCCCCCEEEE STNSSKEKHCSAYECKANRYVELPFLDPNINKDRSRIRNFFAGNFVQWDSLLLLAACVFL CCCCCCHHCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LSMFNDNAIALANYISSGGDRSSASEKSTTAIVSTVTPPSPTTFIPAAFSKIGQQRTKNS HHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC NSHSNSNSRSGINTGPKK CCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIQHNFSEFNTRNLNIMNQQNTLFLKFIVSIILFCSVISYSIAECIDADDFGFPIIAISS CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC RYDAKQLTGQKDNQVAPWVDSKLLVNGKPLVIMVKHWNYHEYDNDISHLSAWSAWYGTNK CCCHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC NKHTLSNITKRFPECRFSNNKTFSDSYDDNDDVPVINPPCLFKHGIGLYALIAKPGVDPN CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCC ANVHSQSYGISKKTINFHVGQNYLSSLNSTELDSGFLDTTPDGNIVKTGGYFHKYQDQED CCCCCCCCCCCEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCC EQYVGGRLYFKILDRFYDDNNGQYKIIIKSGVGDEKDSPETFLINIVKEMLFGNKKNQNK HHHHCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC NGVIQNLFINILKNPSYKIVVNLTLILFVAFSGLAFLIGNINMTAHELVLRTVKILVISV CHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LLNSDTAWKFFYNYLFFIFVDGPQFIIKTINQATAIGPGSSSILGLMIAPHTLKKLFSIL HHCCCCHHHHHHHEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHH FVDWGGFIYIICYLILLYYIFIISFKATVLYLNALILVGIGIIVGPVFLCFVLFQFTKPI HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FENWIKQLTIYALQPVILFAGIAFVGMFIRHEIYASLGFRVCEVPFPPIANTLIKIISGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCC SSKKQSLLNLWFPAQVLKKTLLFSQKCANIPVPEDHIVYLDQNAWKCSDGISGNSKQLIT CHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEECCCCCCCCCCEEEE STNSSKEKHCSAYECKANRYVELPFLDPNINKDRSRIRNFFAGNFVQWDSLLLLAACVFL CCCCCCHHCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LSMFNDNAIALANYISSGGDRSSASEKSTTAIVSTVTPPSPTTFIPAAFSKIGQQRTKNS HHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC NSHSNSNSRSGINTGPKK CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA