| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184199
Identifier: 189184199
GI number: 189184199
Start: 1309685
End: 1310563
Strand: Reverse
Name: 189184199
Synonym: OTT_1292
Alternate gene names: NA
Gene position: 1310563-1309685 (Counterclockwise)
Preceding gene: 189184204
Following gene: 189184198
Centisome position: 65.24
GC content: 29.35
Gene sequence:
>879_bases ATGCGCCCTGTAGTATTCGATTTTTTAACCAATGGTTGTAATTTTGTTAAAAATAATAGTAACAATAATGACACAATATT TTATAACTTTATTGGAAATATCATTCCACCAGAATGGAGAAAGCTAACTGGAGATAATGGAAAAGCATTAAGTAAAACAT CTAAACAGCTTTTATCATTCATAGTATTTAGACTACATATCTATTACAACAAAGATATAGATGAATTACAGGAAAGTTAT CAGCTTTATGAGGATAAGCTTAATGTTTGTCAAAGAAGAGTTAGGCAATGCTTAGTAGAATTAAGAGATGCAGGTTTTAT TGAAGTTGAAAATAGGACAATAATTAAAGACAATGTTAAGTTACGTAATGTCCCTTGCATAAAAATTCTGAAAAATTTTC AGCACTATAGTGAAAAAGGAAAAGAAGAAAATATAGCCTTACCAGAAAAAAAATTTCGCTCCAACCTGAAAGAAATTTCA GGTCAACCTGAAACTTTTTTCAGGGACATATATAGATATATAAAAATATCTAAAAGATCTAGATCTACTGAAGGTGAGTT AGTAGAGAATAAAAAAAATGAAAATGAAGAACAAAATTTTCAAAATGTTGATGATTTTGAAAATGATATACGAACTTCAA CTAAAAATTGCAATCAAGACATTAAATCACTAATAACAAAGATTCTCAAGTCTTCGAATAGTAAAAAAGAATGGTTCAAA AGGTACAGGCTAGAAGAGTTTTACCCACTAACACCAGAAGATGTAGTTACACTGCAACATAAGTCCGATAGAGGTTTTAA CATTAACACTGCCTATAAGCAAAATTGGTCTTCTAAGGCAGATAGTATCAGTATGAAGATTTATATAGGTTTGGCATAA
Upstream 100 bases:
>100_bases TAATGATTTTTGTCAACCTTTTGAACAAAAATTTGATGGTAATTTGTAAAAAAATTATTTTCTAAAACACCTACTATAGC TGTATTTTTGGAGATAAAAA
Downstream 100 bases:
>100_bases CAATTTTTTTCAACCTATTTTCAACCTTTTGAACAAAAATTTGAAGCAGCTATGGCTTATCAAATTTTGACTTCTTGTAG TTTTGGGCCAGCGGTTCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MRPVVFDFLTNGCNFVKNNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVCQRRVRQCLVELRDAGFIEVENRTIIKDNVKLRNVPCIKILKNFQHYSEKGKEENIALPEKKFRSNLKEIS GQPETFFRDIYRYIKISKRSRSTEGELVENKKNENEEQNFQNVDDFENDIRTSTKNCNQDIKSLITKILKSSNSKKEWFK RYRLEEFYPLTPEDVVTLQHKSDRGFNINTAYKQNWSSKADSISMKIYIGLA
Sequences:
>Translated_292_residues MRPVVFDFLTNGCNFVKNNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVCQRRVRQCLVELRDAGFIEVENRTIIKDNVKLRNVPCIKILKNFQHYSEKGKEENIALPEKKFRSNLKEIS GQPETFFRDIYRYIKISKRSRSTEGELVENKKNENEEQNFQNVDDFENDIRTSTKNCNQDIKSLITKILKSSNSKKEWFK RYRLEEFYPLTPEDVVTLQHKSDRGFNINTAYKQNWSSKADSISMKIYIGLA >Mature_292_residues MRPVVFDFLTNGCNFVKNNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVCQRRVRQCLVELRDAGFIEVENRTIIKDNVKLRNVPCIKILKNFQHYSEKGKEENIALPEKKFRSNLKEIS GQPETFFRDIYRYIKISKRSRSTEGELVENKKNENEEQNFQNVDDFENDIRTSTKNCNQDIKSLITKILKSSNSKKEWFK RYRLEEFYPLTPEDVVTLQHKSDRGFNINTAYKQNWSSKADSISMKIYIGLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34536; Mature: 34536
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPVVFDFLTNGCNFVKNNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSF CCCCHHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHH IVFRLHIYYNKDIDELQESYQLYEDKLNVCQRRVRQCLVELRDAGFIEVENRTIIKDNVK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCE LRNVPCIKILKNFQHYSEKGKEENIALPEKKFRSNLKEISGQPETFFRDIYRYIKISKRS ECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC RSTEGELVENKKNENEEQNFQNVDDFENDIRTSTKNCNQDIKSLITKILKSSNSKKEWFK CCCCCHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RYRLEEFYPLTPEDVVTLQHKSDRGFNINTAYKQNWSSKADSISMKIYIGLA HHHHHHCCCCCHHHEEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MRPVVFDFLTNGCNFVKNNSNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSF CCCCHHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHH IVFRLHIYYNKDIDELQESYQLYEDKLNVCQRRVRQCLVELRDAGFIEVENRTIIKDNVK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCE LRNVPCIKILKNFQHYSEKGKEENIALPEKKFRSNLKEISGQPETFFRDIYRYIKISKRS ECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC RSTEGELVENKKNENEEQNFQNVDDFENDIRTSTKNCNQDIKSLITKILKSSNSKKEWFK CCCCCHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RYRLEEFYPLTPEDVVTLQHKSDRGFNINTAYKQNWSSKADSISMKIYIGLA HHHHHHCCCCCHHHEEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA