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The map label for this gene is yrbD [C]

Identifier: 189184155

GI number: 189184155

Start: 1280705

End: 1281190

Strand: Reverse

Name: yrbD [C]

Synonym: OTT_1248

Alternate gene names: 189184155

Gene position: 1281190-1280705 (Counterclockwise)

Preceding gene: 189184156

Following gene: 189184154

Centisome position: 63.77

GC content: 30.04

Gene sequence:

>486_bases
ATGCAGTATAGTTATTTAGAAACATTTATAGGCTTTTGCGTGATGCTATTTGTTACGCTATGCATATATTTTGGTTATAA
AACATATAATGATTATTATATAAAAGATAATAACTTTAAAACTGTTTTTGCTACTTTTCAGAATGTTGAAGGATTAAACA
AGGGTAGTAGTGTATTCGTATCTGGTATTAAGATTGGCACAGTTGAAAAATTAACTCTAGTGCCATCATCTTTTGATGTA
GCTGTAGAATTAAAACTATCTGCAGATATAAATCTTCCTAATGATTCTCAGGCAATAATTATGAACCGCGGACTACTAGG
CGAAAAGTATATTACTATTATTCCTGGAATAGAAGAAAATTATATTGCAGACAAAGGGGAAATACATTTTACACAATCAG
CTATAAATGTTGAAAGAATGATTGGCAAAGTATTCTCTGAACTTTTTGGCAGCAACTATTTTAAAATCTCTTCTAGCAGG
CATTAA

Upstream 100 bases:

>100_bases
ACGGAATTTTCATATTCTCCATTAATAAGAAATGGTGATAGCTTGGTAAGACAAGAAGTATCTTCTGATTATAAATCTTG
GCAACCAAAAAAATAAGAAT

Downstream 100 bases:

>100_bases
AAATGTCAATTAAATTGCAGCCAGTTAAGGGTAGCAAAGATTTACTACCTGAAGAATTTGGAAAACATGACTATATTGTT
AGCGTTTCTAGGAATTTAAG

Product: ABC transport system substrate-binding protein

Products: NA

Alternate protein names: Mce Related Protein; Mammalian Cell Entry Related Domain-Containing Protein; Luene Transport System Ttg2C Protein; Mce-Related Protein; Luene Tolerance C; Organic Solvent Resistance Transport System Ttg2C Protein; Conserved Family Protein; Mce Related Family; Mce Family Protein; Virulence Factor MCE-Like Protein-Related Protein; Cell Entry-Like Protein; Mce Related Family Protein; Signal Peptide Protein; Luene Tolerance Protein; Virulence Protein Transporter; ABC-Type Transport System Protein; Mammalian Cell Entry Related Protein

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MQYSYLETFIGFCVMLFVTLCIYFGYKTYNDYYIKDNNFKTVFATFQNVEGLNKGSSVFVSGIKIGTVEKLTLVPSSFDV
AVELKLSADINLPNDSQAIIMNRGLLGEKYITIIPGIEENYIADKGEIHFTQSAINVERMIGKVFSELFGSNYFKISSSR
H

Sequences:

>Translated_161_residues
MQYSYLETFIGFCVMLFVTLCIYFGYKTYNDYYIKDNNFKTVFATFQNVEGLNKGSSVFVSGIKIGTVEKLTLVPSSFDV
AVELKLSADINLPNDSQAIIMNRGLLGEKYITIIPGIEENYIADKGEIHFTQSAINVERMIGKVFSELFGSNYFKISSSR
H
>Mature_161_residues
MQYSYLETFIGFCVMLFVTLCIYFGYKTYNDYYIKDNNFKTVFATFQNVEGLNKGSSVFVSGIKIGTVEKLTLVPSSFDV
AVELKLSADINLPNDSQAIIMNRGLLGEKYITIIPGIEENYIADKGEIHFTQSAINVERMIGKVFSELFGSNYFKISSSR
H

Specific function: Unknown

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789584, Length=157, Percent_Identity=29.9363057324841, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18199; Mature: 18199

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYSYLETFIGFCVMLFVTLCIYFGYKTYNDYYIKDNNFKTVFATFQNVEGLNKGSSVFV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCEEEE
SGIKIGTVEKLTLVPSSFDVAVELKLSADINLPNDSQAIIMNRGLLGEKYITIIPGIEEN
EEEEECCEEEEEECCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCEEEEECCCCCC
YIADKGEIHFTQSAINVERMIGKVFSELFGSNYFKISSSRH
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
>Mature Secondary Structure
MQYSYLETFIGFCVMLFVTLCIYFGYKTYNDYYIKDNNFKTVFATFQNVEGLNKGSSVFV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCEEEE
SGIKIGTVEKLTLVPSSFDVAVELKLSADINLPNDSQAIIMNRGLLGEKYITIIPGIEEN
EEEEECCEEEEEECCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCEEEEECCCCCC
YIADKGEIHFTQSAINVERMIGKVFSELFGSNYFKISSSRH
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA