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The map label for this gene is sco2

Identifier: 189183848

GI number: 189183848

Start: 980528

End: 981178

Strand: Reverse

Name: sco2

Synonym: OTT_0941

Alternate gene names: NA

Gene position: 981178-980528 (Counterclockwise)

Preceding gene: 189183849

Following gene: 189183847

Centisome position: 48.84

GC content: 26.42

Gene sequence:

>651_bases
ATGAATATTACAAGTAACAAGTGCTTTTTTAAGCTATTAGCTATTCTGTCGATAATTATAGGAATGTTATCTCTATACTT
CATATTTATTTTATGGCCTCAATCTAAAAAAAAAGTAGCTAATACAGATAATATTAGCTATTCTATGGTCACAAGCAGCG
AAATTTTACTTGGTGGAGATTTTACTTTAATTGATACTAATAACCGAGAATTTTACAGTAAATCTTTAAGAGGTAAACCT
TATCTTATCTATTTTGGCTTTACTTTTTGTCCTGATGTATGTCCAGCTACATTAGAAAAATTATCAAAAGTTATTAAAGT
CTTAGATATGTATCATATAGATATCTCTACAATTTTTGTTACAGTTGATCCTAAACGAGATAATGCTAGTACTTTAAAGA
ATTACATGACAAATTTTCACAGCAAAATTATTGCATTAACAGGTACTAAACCTCAAATCGAGGATATAACTAAGAAATTC
GGTGTTTATTATTCTATTTCTGCATTAAGTGATAGAAACAGTAATGATTATCTAATAGATCACTCTACTTTTATATATTT
AATAGATAAAAATGGCAAATACATGTCACATTTTACTCTTGATGATACCCCAGAGAAAATAATAGAATATATTAGAATTC
ATTTAAAATAA

Upstream 100 bases:

>100_bases
TATATTATATTTAGATTAGTAAAAAATTAACTTGTAGTAAAAAAATTCTTAAAGTAGTATTAGTAATTTAGTTTAAATAA
AAAATGAAAATCGTAAATAA

Downstream 100 bases:

>100_bases
CAATATCGTATCAGATATAACATATCCAATAAGTAAAGGTGCAAAGGCAGATCAAGTACAAGGAAGAAGAAAAGTTAATT
TTTGCTAACTTCTACACTTG

Product: Sco2 protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNITSNKCFFKLLAILSIIIGMLSLYFIFILWPQSKKKVANTDNISYSMVTSSEILLGGDFTLIDTNNREFYSKSLRGKP
YLIYFGFTFCPDVCPATLEKLSKVIKVLDMYHIDISTIFVTVDPKRDNASTLKNYMTNFHSKIIALTGTKPQIEDITKKF
GVYYSISALSDRNSNDYLIDHSTFIYLIDKNGKYMSHFTLDDTPEKIIEYIRIHLK

Sequences:

>Translated_216_residues
MNITSNKCFFKLLAILSIIIGMLSLYFIFILWPQSKKKVANTDNISYSMVTSSEILLGGDFTLIDTNNREFYSKSLRGKP
YLIYFGFTFCPDVCPATLEKLSKVIKVLDMYHIDISTIFVTVDPKRDNASTLKNYMTNFHSKIIALTGTKPQIEDITKKF
GVYYSISALSDRNSNDYLIDHSTFIYLIDKNGKYMSHFTLDDTPEKIIEYIRIHLK
>Mature_216_residues
MNITSNKCFFKLLAILSIIIGMLSLYFIFILWPQSKKKVANTDNISYSMVTSSEILLGGDFTLIDTNNREFYSKSLRGKP
YLIYFGFTFCPDVCPATLEKLSKVIKVLDMYHIDISTIFVTVDPKRDNASTLKNYMTNFHSKIIALTGTKPQIEDITKKF
GVYYSISALSDRNSNDYLIDHSTFIYLIDKNGKYMSHFTLDDTPEKIIEYIRIHLK

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=159, Percent_Identity=34.5911949685535, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI281182722, Length=159, Percent_Identity=34.5911949685535, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI281182716, Length=159, Percent_Identity=34.5911949685535, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI153791313, Length=159, Percent_Identity=34.5911949685535, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI4759068, Length=163, Percent_Identity=34.3558282208589, Blast_Score=121, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17531419, Length=181, Percent_Identity=32.0441988950276, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6319498, Length=182, Percent_Identity=36.8131868131868, Blast_Score=136, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6319511, Length=210, Percent_Identity=33.8095238095238, Blast_Score=127, Evalue=2e-30,
Organism=Drosophila melanogaster, GI19920710, Length=200, Percent_Identity=31, Blast_Score=121, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 24887; Mature: 24887

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITSNKCFFKLLAILSIIIGMLSLYFIFILWPQSKKKVANTDNISYSMVTSSEILLGGD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEECCEEEECCC
FTLIDTNNREFYSKSLRGKPYLIYFGFTFCPDVCPATLEKLSKVIKVLDMYHIDISTIFV
EEEEECCCCHHHHHHCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEE
TVDPKRDNASTLKNYMTNFHSKIIALTGTKPQIEDITKKFGVYYSISALSDRNSNDYLID
EECCCCCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHCEEEEEEECCCCCCCCEEEE
HSTFIYLIDKNGKYMSHFTLDDTPEKIIEYIRIHLK
CCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNITSNKCFFKLLAILSIIIGMLSLYFIFILWPQSKKKVANTDNISYSMVTSSEILLGGD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEECCEEEECCC
FTLIDTNNREFYSKSLRGKPYLIYFGFTFCPDVCPATLEKLSKVIKVLDMYHIDISTIFV
EEEEECCCCHHHHHHCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEE
TVDPKRDNASTLKNYMTNFHSKIIALTGTKPQIEDITKKFGVYYSISALSDRNSNDYLID
EECCCCCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHCEEEEEEECCCCCCCCEEEE
HSTFIYLIDKNGKYMSHFTLDDTPEKIIEYIRIHLK
CCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA