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The map label for this gene is intD [H]

Identifier: 189183843

GI number: 189183843

Start: 976691

End: 977332

Strand: Direct

Name: intD [H]

Synonym: OTT_0936

Alternate gene names: 189183843

Gene position: 976691-977332 (Clockwise)

Preceding gene: 189183842

Following gene: 189183852

Centisome position: 48.62

GC content: 32.4

Gene sequence:

>642_bases
ATGTTTAATAAGGCAATAAAATGGGAATTAATGGACAGAAATCCTACACTAAGAATAGATAAACACAAAATGCAAGCAAG
AGAAAGACGTCTAAGTTACGATGAAATGACTAAATTTTTACAAGTATTATGTAGAGAAGCAAGTGTGTTGATAAGAGATT
TTGCATTACTAGCGTTATATACTGGAGCTAGAAAAAGGAATGTGTTAGAGATGGAATGGGACAATATAGATTTTGTAAGA
AAAATATGGCATATACCAAAAACTAAGAATGGAAAGGCGCAAAATATACCATTAACAGATGAGATAATAGAAATATTGCA
AGCAAGGAAATTAACATCTAAAAGTAAATGGGTGCTATCAACTGATAGAAGCAAAAGCGTGCACTTGGAAAATCCTTATA
GAGGATGGTATAAGATTTGTAAAAAGGCAGGCATAAAAAATTTAAGGATACACGATCTAAGAAGGACGTTTGCAAGTTGT
ATGGCAGATGAAGGTGCAGGTCAGTATATAATTAGTGCAGCATTGAATCATAGTGACATAAAATCAACGAGTATTTATAC
CAAAGTTAGTTTAGAGCCAGTAAGGCAATATATGTCTAAGGTAACACAAATGATAAGAGACTGTTCAAGAATTGATATTT
GA

Upstream 100 bases:

>100_bases
AAACGATGTTAAAAGGAATGATATTGAACCAATATTCAATGATATCAGCAAAGAGGAGAAATATGCTACAGCAAATCTAT
TTCTAATAACCTTATGCACT

Downstream 100 bases:

>100_bases
AATAAATACTGAAATAACATGAAACTTAGCATGAGTAAGAAATTCATATATAAAAACTAATTATCACAGGTAAAATTAGA
AAGTTTTGCTGTTAATTCTT

Product: putative integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MFNKAIKWELMDRNPTLRIDKHKMQARERRLSYDEMTKFLQVLCREASVLIRDFALLALYTGARKRNVLEMEWDNIDFVR
KIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLSTDRSKSVHLENPYRGWYKICKKAGIKNLRIHDLRRTFASC
MADEGAGQYIISAALNHSDIKSTSIYTKVSLEPVRQYMSKVTQMIRDCSRIDI

Sequences:

>Translated_213_residues
MFNKAIKWELMDRNPTLRIDKHKMQARERRLSYDEMTKFLQVLCREASVLIRDFALLALYTGARKRNVLEMEWDNIDFVR
KIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLSTDRSKSVHLENPYRGWYKICKKAGIKNLRIHDLRRTFASC
MADEGAGQYIISAALNHSDIKSTSIYTKVSLEPVRQYMSKVTQMIRDCSRIDI
>Mature_213_residues
MFNKAIKWELMDRNPTLRIDKHKMQARERRLSYDEMTKFLQVLCREASVLIRDFALLALYTGARKRNVLEMEWDNIDFVR
KIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLSTDRSKSVHLENPYRGWYKICKKAGIKNLRIHDLRRTFASC
MADEGAGQYIISAALNHSDIKSTSIYTKVSLEPVRQYMSKVTQMIRDCSRIDI

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=214, Percent_Identity=23.3644859813084, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 25022; Mature: 25022

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNKAIKWELMDRNPTLRIDKHKMQARERRLSYDEMTKFLQVLCREASVLIRDFALLALY
CCCCCEEEEEECCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLS
HCHHHCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
TDRSKSVHLENPYRGWYKICKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHSDI
CCCCCCEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
KSTSIYTKVSLEPVRQYMSKVTQMIRDCSRIDI
CCCHHEEEECHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFNKAIKWELMDRNPTLRIDKHKMQARERRLSYDEMTKFLQVLCREASVLIRDFALLALY
CCCCCEEEEEECCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLS
HCHHHCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
TDRSKSVHLENPYRGWYKICKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHSDI
CCCCCCEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
KSTSIYTKVSLEPVRQYMSKVTQMIRDCSRIDI
CCCHHEEEECHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]