| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is traG [H]
Identifier: 189183762
GI number: 189183762
Start: 902734
End: 904668
Strand: Reverse
Name: traG [H]
Synonym: OTT_0855
Alternate gene names: 189183762
Gene position: 904668-902734 (Counterclockwise)
Preceding gene: 189183763
Following gene: 189183760
Centisome position: 45.03
GC content: 34.88
Gene sequence:
>1935_bases ATGTTTGCTTCTCTTTCCTCGCAAACGAGTTATTTTGTATCTAAAATGTTGGAAAATCATCTTTTACCGGCTTATGAAGG ACTATCGAGCAGAAAAACTGGTATTATGTTTGGAGCTAAGGCTGTAGCTAAGATTCGAGATGTGCAAATACATGATCCAG TAACTTTAACTAATACTAAGGAATTTCTTAGACAATGCTTTATGAAGCCTTACATCATAGGTAATATCTTAGGTAAAAAA GCAGCTGCTCAACAAACTAATGATATCATAGGATTTATCGAGCAGAATATACCTAATAATTTCGGTATTTATTATCGCGA ACCTAGTAATTTAGGTATTAGTTTCAAGACATGCAGACAAGCTACTCCATTAATTAAGGCAGCAATTCATAAAGAATTAA ACGAAGGACTTCTAACCAAGTTTGCAGCTGCGATTGGAGTTCAATCTGATCAGTCACACATGTTAAGTCAAAGACTAAAA GTCATGACTGGAGATACACTAAAATATCTACAAAGAGAACAACAAGACATTCATGAATGGATGAAGCAAGCTATGCTACT TAATGCTAATCGTGAGTCATATGATGACTGGCGTGAGAAGTTTTCATTATCACGAATTTATCCTAATCTGGTGAGTATGC ATGCAATCAGAGGGCTCTTTCAAAAATCATTTTCGTATCTAGTCGCTGGGGAAATGGCTGCTCACATGATGCCTATTTTA CAATCTGTTTTTTTTGCATTAGTAGTCTCAATGATCTTTATTGTATTTCCAATGGGCCTATTACCTGGCGGCTATAACAT ACTCAAAACATGGATTTTGTTAATAATATGGGTCAGCAGCTGGCCAGTATTTTTTACAATAATCCATTGTCTAGGAATGA TCAGCTTATCCAGTAAATCTGGAGCTTTCGGTAGTGATTATGGTCTGAATATGCTATCGCAAGGAAGCTTTGCAGAGATG ATTTTATATAGCTATGCGACATTTCAAATGCTTGCATCATCAATACCAATGCTTTCTTGGTCAGTGATAAAAGCTTGTGC TCATGCTACAGCTAACTTAGCCAGCCAGTTCTCTCCTATACAAGTTGCTAGCAGCTTAGGAAGTAATATAGTCGACAATA ACTTGAGTATGGATAATTACAGCATAGGCAATAGAACTATTTCTCAACAAAACCTAGCTCCTTCATTAGATATGACTGAT AGTATTATCAATTATGGTAGCTACAAAATTATTACTGGAAATAATGGCGAGCAATTTGTAATTCAAACTGTAGATTCATT GGGAAATAACTTCCGCTCTTCTGCACTGATACAAACTGGATATCAAAACCAGTTTTTGAGTTCTCAGAGCACGCTTAATT CACTGACACAAAAAGAGGCCAATCTTATTTCAACAGGAAACTCCATGGCCATAGACATAGGCAGAAGGTTAACTCATGAT GAAGCTCTGTCTATAGGCCTAACTGAGAGTGAATATCAAGCTCTGCAAATCGTTAGTTCTGATAGTGGATCCTTTAGTCA GCATACAGGTAGTAGCGATAGAAAGACAAGTGGTACTAATGTAGAAGTAGGAGCTGGGAGATTTTTTGTCAAAAGTGTAG TTTTAGGATGGCAAATACATAATGCAGAAGCTTATATTAATAAAGGTTTAACTTTAGCATTTTTAGGACAATTGCAGAAT GCAATAGAACATTTTGATTTAGCTATTAAATATGATCCTAAAGATTTAAAAGCATACAGTAATAAAGGCTATGTATTAAG TTTACTAAAAAAATATCATGAAGCAGTGGAAAGCTGTAACTTAGCTATTAAATATGATCCAAATTGCTCAGATGCTTATT ATATCAAAGGAATGATTTTTGAGAAATTAGGAAAACATCAAGATCTGATTAAAAATTATGATATGGCTACTATAGTCATT TACAATGAAGTTTGA
Upstream 100 bases:
>100_bases TTAATCAATCAGAAATAATAATTTTATAAAAACTTACATCTTTTTTATAAAATTATTATTTCTTTTCTTGATTCTTATCA CGGTATCTATAGGTATTGCA
Downstream 100 bases:
>100_bases GCATAGAAAAAAGAGATAATAGAATCATAAGATTTAGCAAATTGAGTAATTTGATGTCTAATCCACCGCTTCATATTAGC CGAAAACTTTTCTATCGGAT
Product: putative conjugative transfer protein TraG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 644; Mature: 644
Protein sequence:
>644_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTD SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALIQTGYQNQFLSSQSTLNSLTQKEANLISTGNSMAIDIGRRLTHD EALSIGLTESEYQALQIVSSDSGSFSQHTGSSDRKTSGTNVEVGAGRFFVKSVVLGWQIHNAEAYINKGLTLAFLGQLQN AIEHFDLAIKYDPKDLKAYSNKGYVLSLLKKYHEAVESCNLAIKYDPNCSDAYYIKGMIFEKLGKHQDLIKNYDMATIVI YNEV
Sequences:
>Translated_644_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTD SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALIQTGYQNQFLSSQSTLNSLTQKEANLISTGNSMAIDIGRRLTHD EALSIGLTESEYQALQIVSSDSGSFSQHTGSSDRKTSGTNVEVGAGRFFVKSVVLGWQIHNAEAYINKGLTLAFLGQLQN AIEHFDLAIKYDPKDLKAYSNKGYVLSLLKKYHEAVESCNLAIKYDPNCSDAYYIKGMIFEKLGKHQDLIKNYDMATIVI YNEV >Mature_644_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTD SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALIQTGYQNQFLSSQSTLNSLTQKEANLISTGNSMAIDIGRRLTHD EALSIGLTESEYQALQIVSSDSGSFSQHTGSSDRKTSGTNVEVGAGRFFVKSVVLGWQIHNAEAYINKGLTLAFLGQLQN AIEHFDLAIKYDPKDLKAYSNKGYVLSLLKKYHEAVESCNLAIKYDPNCSDAYYIKGMIFEKLGKHQDLIKNYDMATIVI YNEV
Specific function: Plays a crucial role in donor-recipient cell interactions. Required for two stages of the conjugation process:pilus biosynthesis and mating aggregate stabilization. May interact with traN [H]
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012931 [H]
Pfam domain/function: PF07916 TraG_N [H]
EC number: NA
Molecular weight: Translated: 71686; Mature: 71686
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTK CCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCEEECHHHHHHHHCEEECCCEEECCHH EFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQ HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHH ATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLKVMTGDTLKYLQREQQDIHEW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCC GAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPI CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH QVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTDSIINYGSYKIITGNNGEQFV HHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHCCCCEEEEECCCCCEEH IQTVDSLGNNFRSSALIQTGYQNQFLSSQSTLNSLTQKEANLISTGNSMAIDIGRRLTHD HEEHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC EALSIGLTESEYQALQIVSSDSGSFSQHTGSSDRKTSGTNVEVGAGRFFVKSVVLGWQIH HHHEECCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHEEEE NAEAYINKGLTLAFLGQLQNAIEHFDLAIKYDPKDLKAYSNKGYVLSLLKKYHEAVESCN CCHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCC LAIKYDPNCSDAYYIKGMIFEKLGKHQDLIKNYDMATIVIYNEV EEEEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCEEEEEEEECC >Mature Secondary Structure MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTK CCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCEEECHHHHHHHHCEEECCCEEECCHH EFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQ HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHH ATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLKVMTGDTLKYLQREQQDIHEW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCC GAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWSVIKACAHATANLASQFSPI CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH QVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTDSIINYGSYKIITGNNGEQFV HHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHCCCCEEEEECCCCCEEH IQTVDSLGNNFRSSALIQTGYQNQFLSSQSTLNSLTQKEANLISTGNSMAIDIGRRLTHD HEEHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC EALSIGLTESEYQALQIVSSDSGSFSQHTGSSDRKTSGTNVEVGAGRFFVKSVVLGWQIH HHHEECCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHEEEE NAEAYINKGLTLAFLGQLQNAIEHFDLAIKYDPKDLKAYSNKGYVLSLLKKYHEAVESCN CCHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHCC LAIKYDPNCSDAYYIKGMIFEKLGKHQDLIKNYDMATIVIYNEV EEEEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1348105; 7915817 [H]