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The map label for this gene is yfjD [H]

Identifier: 189183532

GI number: 189183532

Start: 650128

End: 651396

Strand: Reverse

Name: yfjD [H]

Synonym: OTT_0625

Alternate gene names: 189183532

Gene position: 651396-650128 (Counterclockwise)

Preceding gene: 189183540

Following gene: 189183531

Centisome position: 32.42

GC content: 29.55

Gene sequence:

>1269_bases
ATGTATTTATTAGAAACAATAATTGTAATCTTATTAGTTCTTTTTTCTTCAGTTTTATCAGCTATTGAAACAGCTGTAAC
TGCAACATCTATAGGTAAAGTACAGCAACTAAAATCTAAAGGTATTCTAAAAACAGATTTACTGCTAAAATTAATGAAAA
ATAAGGAACAAGTTATCAGTACGTTGCTTACTGCTAATAGTATTGTAAATACAGTTGCAACTACTGTTGGTACTAGTATT
GCAATAGCAATTTATAAAGAATTAGGAACTATTATTTCATCGATTGTAATGTCAGGCATAATAATAGTATTTGCTGAAGT
GGTACCAAAAGCAATTGCAGTTTCTAAAGCTGAAACAATAGCTTTATTGGCCGTTGATGTTATTCAAGTACTTTCAACAA
TTTTAGCTCCTGTAAGTTACTCTTTATCTCGTATTATTAACTTTATTTGTTGGCTTTTTAATATTAACCTTGTTAGTAAG
GTTTCTGGGACAGAGGAAATTAGAGGATTAATTGAGCACCAACATCAGGAAGGTAATGTGTTTGATAAAATGGATCGAGA
TATGCTTGGTGGAGTATTAGATATTAAGGATATGGAAGTATCACAAATTATGGTACATAGAAGTAAAATGTGTACTATTA
ATTTTGACTTACCAATAGAAGAATTTGTTGCTAAAGCAATTGCTCTACAGTACTCTAGAATACCTATATGGAAGGAAAGT
AGCGAAAATATTGTAGGTATATTATATGTTCGTGATTTAATAAAGGAATTGCACGCTAATAATTTTGATGTTCGAAATAT
CAAATTAAATGAGCTGATAGCTGATCCATGGTTTATTCCGGAAAATGCTTTGGTAACTAATCAACTAGGTAAGTTTAAGC
AGAAATATAGTAATATAGCATTAGTAATTGATGAATACGGAGTCTTACAGGGAATGATTACTAGACAAGATATTTTAGAA
GAAATTGTTGGCCCAGTTTTTGATAATACGCCTAATAATATCATTAAAGTTAATAATACAACTTATATTATTGATGGTAG
TAGTTCAATTAGAGATGTAAATAGGGAACTAAATTGGAATTTACCTGATGATGCAACTACTGTTGCTGGATTAATAATTT
ATCATATTCAAAAAATTCCACAGCAAGGAGAGGTATATTATTTATTCGGCCTTAAAATACTAATTGATAAGATGCATGCT
CATTATATTCAATTGGTTAAAGTAGAAACAGTGAATATAGATAATAAGGAATTACTTAATGTTGGCTAG

Upstream 100 bases:

>100_bases
TTAAAAAATATAAGTAGCAATTTTTGCTAAAGTGTTTATGTAATATTTTTTAATATAAAATATACCAGACCATTAAGTAT
TGTGATGATTAATTAAAATT

Downstream 100 bases:

>100_bases
TATTGGCTCTTATTTATTAATAATCGCAATGATGCTTTATTCAATAAATTTAGGATACTTTTTTTTATGTAACAATATTA
ACCTATTAAAGATTATTCAT

Product: hemolysin homolog

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MYLLETIIVILLVLFSSVLSAIETAVTATSIGKVQQLKSKGILKTDLLLKLMKNKEQVISTLLTANSIVNTVATTVGTSI
AIAIYKELGTIISSIVMSGIIIVFAEVVPKAIAVSKAETIALLAVDVIQVLSTILAPVSYSLSRIINFICWLFNINLVSK
VSGTEEIRGLIEHQHQEGNVFDKMDRDMLGGVLDIKDMEVSQIMVHRSKMCTINFDLPIEEFVAKAIALQYSRIPIWKES
SENIVGILYVRDLIKELHANNFDVRNIKLNELIADPWFIPENALVTNQLGKFKQKYSNIALVIDEYGVLQGMITRQDILE
EIVGPVFDNTPNNIIKVNNTTYIIDGSSSIRDVNRELNWNLPDDATTVAGLIIYHIQKIPQQGEVYYLFGLKILIDKMHA
HYIQLVKVETVNIDNKELLNVG

Sequences:

>Translated_422_residues
MYLLETIIVILLVLFSSVLSAIETAVTATSIGKVQQLKSKGILKTDLLLKLMKNKEQVISTLLTANSIVNTVATTVGTSI
AIAIYKELGTIISSIVMSGIIIVFAEVVPKAIAVSKAETIALLAVDVIQVLSTILAPVSYSLSRIINFICWLFNINLVSK
VSGTEEIRGLIEHQHQEGNVFDKMDRDMLGGVLDIKDMEVSQIMVHRSKMCTINFDLPIEEFVAKAIALQYSRIPIWKES
SENIVGILYVRDLIKELHANNFDVRNIKLNELIADPWFIPENALVTNQLGKFKQKYSNIALVIDEYGVLQGMITRQDILE
EIVGPVFDNTPNNIIKVNNTTYIIDGSSSIRDVNRELNWNLPDDATTVAGLIIYHIQKIPQQGEVYYLFGLKILIDKMHA
HYIQLVKVETVNIDNKELLNVG
>Mature_422_residues
MYLLETIIVILLVLFSSVLSAIETAVTATSIGKVQQLKSKGILKTDLLLKLMKNKEQVISTLLTANSIVNTVATTVGTSI
AIAIYKELGTIISSIVMSGIIIVFAEVVPKAIAVSKAETIALLAVDVIQVLSTILAPVSYSLSRIINFICWLFNINLVSK
VSGTEEIRGLIEHQHQEGNVFDKMDRDMLGGVLDIKDMEVSQIMVHRSKMCTINFDLPIEEFVAKAIALQYSRIPIWKES
SENIVGILYVRDLIKELHANNFDVRNIKLNELIADPWFIPENALVTNQLGKFKQKYSNIALVIDEYGVLQGMITRQDILE
EIVGPVFDNTPNNIIKVNNTTYIIDGSSSIRDVNRELNWNLPDDATTVAGLIIYHIQKIPQQGEVYYLFGLKILIDKMHA
HYIQLVKVETVNIDNKELLNVG

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=293, Percent_Identity=26.2798634812287, Blast_Score=112, Evalue=7e-25,
Organism=Escherichia coli, GI145693175, Length=399, Percent_Identity=29.0726817042606, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1786879, Length=262, Percent_Identity=27.4809160305344, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790664, Length=414, Percent_Identity=22.7053140096618, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082033, Length=261, Percent_Identity=24.904214559387, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788119, Length=235, Percent_Identity=26.3829787234043, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6324512, Length=329, Percent_Identity=24.9240121580547, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47078; Mature: 47078

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLLETIIVILLVLFSSVLSAIETAVTATSIGKVQQLKSKGILKTDLLLKLMKNKEQVIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHH
TLLTANSIVNTVATTVGTSIAIAIYKELGTIISSIVMSGIIIVFAEVVPKAIAVSKAETI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ALLAVDVIQVLSTILAPVSYSLSRIINFICWLFNINLVSKVSGTEEIRGLIEHQHQEGNV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCH
FDKMDRDMLGGVLDIKDMEVSQIMVHRSKMCTINFDLPIEEFVAKAIALQYSRIPIWKES
HHHHHHHHHCCEECCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCC
SENIVGILYVRDLIKELHANNFDVRNIKLNELIADPWFIPENALVTNQLGKFKQKYSNIA
CCCEEEHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEE
LVIDEYGVLQGMITRQDILEEIVGPVFDNTPNNIIKVNNTTYIIDGSSSIRDVNRELNWN
EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEEECCCHHHHHHHHCCCC
LPDDATTVAGLIIYHIQKIPQQGEVYYLFGLKILIDKMHAHYIQLVKVETVNIDNKELLN
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHEEEEEEEEECCCCCHHCC
VG
CC
>Mature Secondary Structure
MYLLETIIVILLVLFSSVLSAIETAVTATSIGKVQQLKSKGILKTDLLLKLMKNKEQVIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHH
TLLTANSIVNTVATTVGTSIAIAIYKELGTIISSIVMSGIIIVFAEVVPKAIAVSKAETI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ALLAVDVIQVLSTILAPVSYSLSRIINFICWLFNINLVSKVSGTEEIRGLIEHQHQEGNV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCH
FDKMDRDMLGGVLDIKDMEVSQIMVHRSKMCTINFDLPIEEFVAKAIALQYSRIPIWKES
HHHHHHHHHCCEECCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCC
SENIVGILYVRDLIKELHANNFDVRNIKLNELIADPWFIPENALVTNQLGKFKQKYSNIA
CCCEEEHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEE
LVIDEYGVLQGMITRQDILEEIVGPVFDNTPNNIIKVNNTTYIIDGSSSIRDVNRELNWN
EEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEEEECCCHHHHHHHHCCCC
LPDDATTVAGLIIYHIQKIPQQGEVYYLFGLKILIDKMHAHYIQLVKVETVNIDNKELLN
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHEEEEEEEEECCCCCHHCC
VG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]