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The map label for this gene is ccmF [H]

Identifier: 189183531

GI number: 189183531

Start: 648276

End: 650138

Strand: Reverse

Name: ccmF [H]

Synonym: OTT_0624

Alternate gene names: 189183531

Gene position: 650138-648276 (Counterclockwise)

Preceding gene: 189183532

Following gene: 189183530

Centisome position: 32.36

GC content: 28.07

Gene sequence:

>1863_bases
ATGTTGGCTAGTATTGGCTCTTATTTATTAATAATCGCAATGATGCTTTATTCAATAAATTTAGGATACTTTTTTTTATG
TAACAATATTAACCTATTAAAGATTATTCATATTGTAGCTAGTATAAATGTAGTTTTAGCATTTTGTATGCTGGTTGTTA
GCTTTGTTATTTCTGACTTTACTGTTCAAAATGTATTATTAAACTCTAGTGTAATTACACCATTAATTTATAAAATCTCT
GGATCTTGGGCAAGCCATGAAGGATCAATGTTATTATGGTCTTCATTCATGAGTATAGTTAGCGTTTATTCATTAGTTAC
ATGTAATTTTCAATTTCAGTGCAAAAAATTAATTATCGCTTGCCAAAGCTTTATCCTACTTGGATTTATTAGTTTAGTTT
ATTTTGCTTTTAATCCTTTTATAGGTAAATTACCTCGTCATGAGATTGGTTTAGGATTAAATCCTATATTACAAGATATA
GGATTAGTAGTTCATCCGCCAGTTCTTTTTTTTGCTTATGCTTGTTATTTAATACCATTTGTTTATAACGCTATAGCTCT
TTTATATAATAATCAAGCTTCAGTACTAATAGATAAGGCTGTTGTATTTTCTAAAATTGGATGGTTATCTTTAACTATCA
GCATTGCTTTAGGAAGCTGGTGGGCCTATCGAGAACTTGGTTGGGGTGGATATTGGTTCTTCGATCCAGTAGAAAACATT
TCTTTGATGCCGTGGTTATCAGCGACTATATATCATCACTCATCTTTATATACACGATCCAATAACACACTACTGCGATG
TTCTATTTTATTCGCTATTATGACGTTTTTATTTTGCATATTAGGGACATTTTTAGTTAGGAGTGATATATTAACTTCTG
TACATTCTTTTTCTTTGAGTGGTTTAAGAACATATTTTGTATTGATTTTTCTTGTCATTTTATCTCTTGCTAGTTTAGTG
TTATATACTTTACGAATTAGTAAATTTTCTAGTGATGCAAAAGTTAATGCCAGAGAACTACTGATATTATTAGGTAATAT
TTTATGGTTATCAGCACTTATAGTAATTTTCATTGCTATTTTTTATCCAATATTTTATAAATTAATTTATGGTAGTAAAA
TATCAATTGGGTATAATTATTTTGTTAGTACTTTTATTCCAATTATACTACCAACAGCTTTATTAGCAGGTAGTATCTAT
AAGATAAAGCAAAAATCTAATTATTGTAGCGTTGTAATTACTCTCAGCATATCAGCAGTAATTATTTACTTTAGTTATAG
AGATTTAAGTATTGGTAGTTTAGCAATAGTTTGTTCAGTATATCTTATTCAAGAGTCATTATATCACTTAATAAAGTCTT
CTAATTTCTTTACAGTGAAAATTCCTTATAAAGTATTAGTTGTTACTATTAGCCATTTGGGATTCGGTATTCTTATGTTA
TCTATTAGCCTTAATGCTAAACTTCAGCATGATACTGATTTTATTGGTAAAATCGGTAATACAATTCACAATAATGGGTT
GCATATTACTCTAAGAAATACTAACTATGCTAAGGGGGCCAACTACTTTAGACAAATAGCTGAATTTTGGATTGAAAATG
ATAAACAAGAAATATTTATACTTAAGCCTGAGAATAGATATTATTATGTTGAAGATATTATAGTACCTGAAAGTGATATA
TACAGTACTTTATTATATGATATATACGTAGTTCTAAGCAAAGTAGATGATGATGTAGTTTATGCTAAAATATATTATCG
TCCGTTTATGTCTACGTTATGGATAGGTGCTGCTTTAATATCAATTGGAATGGTACTATCTATTATAGTTAGTACCAAAA
AAGATAATAAACATGCTTTTTAA

Upstream 100 bases:

>100_bases
TATTTATTCGGCCTTAAAATACTAATTGATAAGATGCATGCTCATTATATTCAATTGGTTAAAGTAGAAACAGTGAATAT
AGATAATAAGGAATTACTTA

Downstream 100 bases:

>100_bases
TAAAAAAAGTATAGAAATTTAACTATATTTTAAACACAAGTTTGATATAGTTAGGAGATTAAAGCCGAGGTAAAGAAAGT
GGAAGATAATTCAACCTTGA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 620; Mature: 620

Protein sequence:

>620_residues
MLASIGSYLLIIAMMLYSINLGYFFLCNNINLLKIIHIVASINVVLAFCMLVVSFVISDFTVQNVLLNSSVITPLIYKIS
GSWASHEGSMLLWSSFMSIVSVYSLVTCNFQFQCKKLIIACQSFILLGFISLVYFAFNPFIGKLPRHEIGLGLNPILQDI
GLVVHPPVLFFAYACYLIPFVYNAIALLYNNQASVLIDKAVVFSKIGWLSLTISIALGSWWAYRELGWGGYWFFDPVENI
SLMPWLSATIYHHSSLYTRSNNTLLRCSILFAIMTFLFCILGTFLVRSDILTSVHSFSLSGLRTYFVLIFLVILSLASLV
LYTLRISKFSSDAKVNARELLILLGNILWLSALIVIFIAIFYPIFYKLIYGSKISIGYNYFVSTFIPIILPTALLAGSIY
KIKQKSNYCSVVITLSISAVIIYFSYRDLSIGSLAIVCSVYLIQESLYHLIKSSNFFTVKIPYKVLVVTISHLGFGILML
SISLNAKLQHDTDFIGKIGNTIHNNGLHITLRNTNYAKGANYFRQIAEFWIENDKQEIFILKPENRYYYVEDIIVPESDI
YSTLLYDIYVVLSKVDDDVVYAKIYYRPFMSTLWIGAALISIGMVLSIIVSTKKDNKHAF

Sequences:

>Translated_620_residues
MLASIGSYLLIIAMMLYSINLGYFFLCNNINLLKIIHIVASINVVLAFCMLVVSFVISDFTVQNVLLNSSVITPLIYKIS
GSWASHEGSMLLWSSFMSIVSVYSLVTCNFQFQCKKLIIACQSFILLGFISLVYFAFNPFIGKLPRHEIGLGLNPILQDI
GLVVHPPVLFFAYACYLIPFVYNAIALLYNNQASVLIDKAVVFSKIGWLSLTISIALGSWWAYRELGWGGYWFFDPVENI
SLMPWLSATIYHHSSLYTRSNNTLLRCSILFAIMTFLFCILGTFLVRSDILTSVHSFSLSGLRTYFVLIFLVILSLASLV
LYTLRISKFSSDAKVNARELLILLGNILWLSALIVIFIAIFYPIFYKLIYGSKISIGYNYFVSTFIPIILPTALLAGSIY
KIKQKSNYCSVVITLSISAVIIYFSYRDLSIGSLAIVCSVYLIQESLYHLIKSSNFFTVKIPYKVLVVTISHLGFGILML
SISLNAKLQHDTDFIGKIGNTIHNNGLHITLRNTNYAKGANYFRQIAEFWIENDKQEIFILKPENRYYYVEDIIVPESDI
YSTLLYDIYVVLSKVDDDVVYAKIYYRPFMSTLWIGAALISIGMVLSIIVSTKKDNKHAF
>Mature_620_residues
MLASIGSYLLIIAMMLYSINLGYFFLCNNINLLKIIHIVASINVVLAFCMLVVSFVISDFTVQNVLLNSSVITPLIYKIS
GSWASHEGSMLLWSSFMSIVSVYSLVTCNFQFQCKKLIIACQSFILLGFISLVYFAFNPFIGKLPRHEIGLGLNPILQDI
GLVVHPPVLFFAYACYLIPFVYNAIALLYNNQASVLIDKAVVFSKIGWLSLTISIALGSWWAYRELGWGGYWFFDPVENI
SLMPWLSATIYHHSSLYTRSNNTLLRCSILFAIMTFLFCILGTFLVRSDILTSVHSFSLSGLRTYFVLIFLVILSLASLV
LYTLRISKFSSDAKVNARELLILLGNILWLSALIVIFIAIFYPIFYKLIYGSKISIGYNYFVSTFIPIILPTALLAGSIY
KIKQKSNYCSVVITLSISAVIIYFSYRDLSIGSLAIVCSVYLIQESLYHLIKSSNFFTVKIPYKVLVVTISHLGFGILML
SISLNAKLQHDTDFIGKIGNTIHNNGLHITLRNTNYAKGANYFRQIAEFWIENDKQEIFILKPENRYYYVEDIIVPESDI
YSTLLYDIYVVLSKVDDDVVYAKIYYRPFMSTLWIGAALISIGMVLSIIVSTKKDNKHAF

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=606, Percent_Identity=30.6930693069307, Blast_Score=278, Evalue=5e-76,
Organism=Escherichia coli, GI1790511, Length=348, Percent_Identity=36.2068965517241, Blast_Score=189, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70169; Mature: 70169

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASIGSYLLIIAMMLYSINLGYFFLCNNINLLKIIHIVASINVVLAFCMLVVSFVISDF
CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVQNVLLNSSVITPLIYKISGSWASHEGSMLLWSSFMSIVSVYSLVTCNFQFQCKKLIIA
HHHHHHHCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
CQSFILLGFISLVYFAFNPFIGKLPRHEIGLGLNPILQDIGLVVHPPVLFFAYACYLIPF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
VYNAIALLYNNQASVLIDKAVVFSKIGWLSLTISIALGSWWAYRELGWGGYWFFDPVENI
HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHCCCCCEEEECCCCCC
SLMPWLSATIYHHSSLYTRSNNTLLRCSILFAIMTFLFCILGTFLVRSDILTSVHSFSLS
EECHHHHHHHHCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLRTYFVLIFLVILSLASLVLYTLRISKFSSDAKVNARELLILLGNILWLSALIVIFIAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FYPIFYKLIYGSKISIGYNYFVSTFIPIILPTALLAGSIYKIKQKSNYCSVVITLSISAV
HHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEEEEEEEEE
IIYFSYRDLSIGSLAIVCSVYLIQESLYHLIKSSNFFTVKIPYKVLVVTISHLGFGILML
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHEEHHHHHHHHHHHHHE
SISLNAKLQHDTDFIGKIGNTIHNNGLHITLRNTNYAKGANYFRQIAEFWIENDKQEIFI
EEECCCEECCCHHHHHHHCCCEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
LKPENRYYYVEDIIVPESDIYSTLLYDIYVVLSKVDDDVVYAKIYYRPFMSTLWIGAALI
EECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH
SIGMVLSIIVSTKKDNKHAF
HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLASIGSYLLIIAMMLYSINLGYFFLCNNINLLKIIHIVASINVVLAFCMLVVSFVISDF
CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVQNVLLNSSVITPLIYKISGSWASHEGSMLLWSSFMSIVSVYSLVTCNFQFQCKKLIIA
HHHHHHHCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
CQSFILLGFISLVYFAFNPFIGKLPRHEIGLGLNPILQDIGLVVHPPVLFFAYACYLIPF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
VYNAIALLYNNQASVLIDKAVVFSKIGWLSLTISIALGSWWAYRELGWGGYWFFDPVENI
HHHHHHHHCCCCCHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHCCCCCEEEECCCCCC
SLMPWLSATIYHHSSLYTRSNNTLLRCSILFAIMTFLFCILGTFLVRSDILTSVHSFSLS
EECHHHHHHHHCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLRTYFVLIFLVILSLASLVLYTLRISKFSSDAKVNARELLILLGNILWLSALIVIFIAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FYPIFYKLIYGSKISIGYNYFVSTFIPIILPTALLAGSIYKIKQKSNYCSVVITLSISAV
HHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEEEEEEEEE
IIYFSYRDLSIGSLAIVCSVYLIQESLYHLIKSSNFFTVKIPYKVLVVTISHLGFGILML
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHEEHHHHHHHHHHHHHE
SISLNAKLQHDTDFIGKIGNTIHNNGLHITLRNTNYAKGANYFRQIAEFWIENDKQEIFI
EEECCCEECCCHHHHHHHCCCEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
LKPENRYYYVEDIIVPESDIYSTLLYDIYVVLSKVDDDVVYAKIYYRPFMSTLWIGAALI
EECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH
SIGMVLSIIVSTKKDNKHAF
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]