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The map label for this gene is rbfA [H]

Identifier: 189183521

GI number: 189183521

Start: 631070

End: 631432

Strand: Reverse

Name: rbfA [H]

Synonym: OTT_0614

Alternate gene names: 189183521

Gene position: 631432-631070 (Counterclockwise)

Preceding gene: 189183522

Following gene: 189183518

Centisome position: 31.43

GC content: 29.48

Gene sequence:

>363_bases
ATGAAGAAAATATATCAAGCAAAATCATATAAGACTTTAAGAACTGCTAATATGATAAGACTAGCTTTAATTGATGTTCT
GCACTCAAATAAACTGCATACAGATTTATTTGAGTGCAAGATAACTGTCACAAAAGTGCTAGCACAAGCCGGTCAAGGAA
TGTATCACTGCTACATTTTACCATTTAGCAATTCAAAAGTATCTCAAGATAAACTTATGCATGCTATTAATGATTCTCTT
CCTATAATTAGGAGAATGATTACACAAAAAATCAATCTAAAATACTCGCCAGAGTTAAGAATTTTCTATGATTATGGATT
TGATAATGCTGCAAATGTGGATAAAATTTTAAAATCATTATGA

Upstream 100 bases:

>100_bases
TTATTATGATATCAATGTGGGAGATATAATTGAAGCATTTATAGTAACAGAAGAAAAAGCTAAACTTTAACTTATTGACT
AATGCTAATAGTGAATTGTT

Downstream 100 bases:

>100_bases
TAAAGATCTCTTGCGAAACTGGTTAAGGTAGATCAAAATTATAAATGCCAGAGATCAAATTAAATCTAAGAGAGAATCTT
TTACGTCTATTTCGATATTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYILPFSNSKVSQDKLMHAINDSL
PIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL

Sequences:

>Translated_120_residues
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYILPFSNSKVSQDKLMHAINDSL
PIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL
>Mature_120_residues
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYILPFSNSKVSQDKLMHAINDSL
PIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13883; Mature: 13883

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYIL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
PFSNSKVSQDKLMHAINDSLPIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL
EECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCHHHHHHCC
>Mature Secondary Structure
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYIL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
PFSNSKVSQDKLMHAINDSLPIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL
EECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA