| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is infB [H]
Identifier: 189183522
GI number: 189183522
Start: 631463
End: 634003
Strand: Reverse
Name: infB [H]
Synonym: OTT_0615
Alternate gene names: 189183522
Gene position: 634003-631463 (Counterclockwise)
Preceding gene: 189183523
Following gene: 189183521
Centisome position: 31.56
GC content: 32.51
Gene sequence:
>2541_bases ATGACAGATAAGCACAACGAAGAAGGAAAAGACAAAAAACTGAAGTTGCCATCTAAAATGATTATTGGCAAGCACGTAGA TTCTAAAAAATTTAAAACTAGCTACTTCACTTCTCATAATAATAGCGTTACAGTCGAAATTAAGGGTGGTAGAAAGTTTA GCAGTAGCTCTTCATTGCCGCATAAAATTAATACACAAATTTCAACTATAGATGAATTCAATGAAAAAATCAGTCTTTTA AAAAAAGCTGCTTCATTTGCTAAAAGCGAAGAATATAGAAGCAACGTTACTAATTTCACTCCTACAGTAGAAGTAACAGA GCAGCAAGCAAAAGCAGAAACTTCAACTAATATCAACTCAGAACAAACAATAAAAAATAATTCACATCAAAGCAGCAGCA ATACCATAGAAACAACTCAAGAACAAAAACAAAATGATGATCTTTCTTTAAACATTACACCTGTTGAAGCTATAACACAG CTGGAACCTAATCAAAAAATCTTACAAAATCAGCAAAATAGCAGCAGTATATCTTTGAATTCTATTATCTCTAAACCGCA AAATAAGTCATCTATCGAGAATAATGTTGAGTTTGAAACAGAAGCATCAACTAAATCTAGTGCTATCTGGACTAAAAAAA ATAATAGTGCAAAACCTAAGAAATCAGATATTTATCAAATGTTGGATAGTGATTCTAAGTCTAAGACTAGAAGTTTTGCA GCTATTAAACGAGCTAGAGATAAAGAAAAGCGTAAGTTGCAAAATAATGATCTTACAAAAAAAATATATCGCGAAGTTAT TATACCGGATACCATTACTGTTAATGAGCTAGCATTACGTATGTCAGAAAAACTTTCGGACGTAATACAATCCCTTTTAA AACTTGGAATTAAAGCTAATATAAATCAAAGTATAGATGTTGATACAGCAGAACTAATTGCTATTAGCTTAGGGCATTCT GTAAAAAGAATTCAAGATTCTGATGTAGAAAATATTTTGCACTCAGATAAAGATACACAGGAGTCATTATTACCTAGAGC GCCTGTTATAACAGTAATGGGGCATGTAGATCATGGTAAAACTTGTTTATTGGACGCATTAAGGTCAACTGATGTAATAA GCACAGAAGCTGGAGGTATAACGCAACATATTGGAGCATATAAGGTCAATCTACCTAATAATAAATCAATAACGTTCATT GACACTCCTGGACATGAAGCTTTCAGCGAAATACGAACCAGGGGAGCTATGGTTACTGACATTGTAGTATTAGTTATTGC TGCTAACGATGGTATCAAACCTCAAACAATAGAAGCAATTAATCATGCCAAAGCTGCTAAAGTACCTATATTAGTAGCCA TTAATAAAATTGATGCTCCAGATGCTAATCCTGATAAAGTTAAAAACGCTCTGCTGGCTCACAATATAGTACCAGAAGAT TTAGGAGGAGAAACACTTGTAGTTCCAATATCTGCATTAAAAAAAATCAATCTTGACAAACTTGAAGAAGCAATTTTGTT GCTTGCCGATATGCTCGAGCTTAAAGCTAATCCAAATGCCTTAGCATCAGGCACAGTTATTGAATCTCAAGTTGATCATA AAAGCGGCGTAATAGCTACTATACTAGTTCAGCGCGGAACTTTAAAAATTGGAGATATCTTAATAGCTGGCAATGGTTTT GGTAAAGTAAAAAGAATGATCAATGATAAAAACCAGCAAGTAAATTATGCTTATCCATCAGATCCAGTTAAAATACTTGG ATTAAGCCAAATACCAAATGCTGGAGATGCCGTTGCAGTAGTTCAAAATGAAAAGCAAGCCCGTAGTATAGTTGATTATC GTATCAGAAAAGCTAAAGAAGAACAAGATCTTAAGGTTCATAATATTTCTTTAGAAGAGCTCCTTAAACAAGCATCTGCG AACCAATGTAAGGAGCTATCTTTAATTTTAAAAACTGATGTTCATGGCTCTCTTGAAGCTATTGTAGCTAGTATAAATAA AATTGTTAATGATGAAGTCAAAATCAAGATTCTGCATGCAGCAGTTGGAGTTATTAATGAATCTGATATAATATTAGCTA ATGCTTCTAATGCAACTATTCTAGGGTTTAATGTTAAAATTGATTCTGCAGCTAGCATTAAAGCAGAAAGAAATAAAACA AATATTAAATATTATTCTATAATATATGACTTAATTGACTATGTTAAGAGCGCTGTATCAGGTATGTTATCACCTATTAT TCATGAAGAATATACTGGTAGCGCAGAAGTAAGAGCTGTATTTAATATTACTAAAGTTGGTAAGATAGCTGGGTGTTATG TTACTAAAGGATACATTCAGCGTAATAGCAAAGTTAAATTGCTTAGAAATAACGAAGTGATTTTTAGTGGGCCATTGCAA ACCTTAAAACGTTTTAAAGAACATACTAAAGAAGTAAAAGAGGGATTTGAGTGTGGAATAGAGTTAGCTAATTATTATGA TATCAATGTGGGAGATATAATTGAAGCATTTATAGTAACAGAAGAAAAAGCTAAACTTTAA
Upstream 100 bases:
>100_bases TATAAAACACTCAGTACTTTAAGTTAAAAAATTCTGTTTAATAATAAAAGTACATTAAATTTACATAATAACAAAGCAAT ATTACAAGCAGTAAATAATT
Downstream 100 bases:
>100_bases CTTATTGACTAATGCTAATAGTGAATTGTTATGAAGAAAATATATCAAGCAAAATCATATAAGACTTTAAGAACTGCTAA TATGATAAGACTAGCTTTAA
Product: translation initiation factor IF-2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 845
Protein sequence:
>846_residues MTDKHNEEGKDKKLKLPSKMIIGKHVDSKKFKTSYFTSHNNSVTVEIKGGRKFSSSSSLPHKINTQISTIDEFNEKISLL KKAASFAKSEEYRSNVTNFTPTVEVTEQQAKAETSTNINSEQTIKNNSHQSSSNTIETTQEQKQNDDLSLNITPVEAITQ LEPNQKILQNQQNSSSISLNSIISKPQNKSSIENNVEFETEASTKSSAIWTKKNNSAKPKKSDIYQMLDSDSKSKTRSFA AIKRARDKEKRKLQNNDLTKKIYREVIIPDTITVNELALRMSEKLSDVIQSLLKLGIKANINQSIDVDTAELIAISLGHS VKRIQDSDVENILHSDKDTQESLLPRAPVITVMGHVDHGKTCLLDALRSTDVISTEAGGITQHIGAYKVNLPNNKSITFI DTPGHEAFSEIRTRGAMVTDIVVLVIAANDGIKPQTIEAINHAKAAKVPILVAINKIDAPDANPDKVKNALLAHNIVPED LGGETLVVPISALKKINLDKLEEAILLLADMLELKANPNALASGTVIESQVDHKSGVIATILVQRGTLKIGDILIAGNGF GKVKRMINDKNQQVNYAYPSDPVKILGLSQIPNAGDAVAVVQNEKQARSIVDYRIRKAKEEQDLKVHNISLEELLKQASA NQCKELSLILKTDVHGSLEAIVASINKIVNDEVKIKILHAAVGVINESDIILANASNATILGFNVKIDSAASIKAERNKT NIKYYSIIYDLIDYVKSAVSGMLSPIIHEEYTGSAEVRAVFNITKVGKIAGCYVTKGYIQRNSKVKLLRNNEVIFSGPLQ TLKRFKEHTKEVKEGFECGIELANYYDINVGDIIEAFIVTEEKAKL
Sequences:
>Translated_846_residues MTDKHNEEGKDKKLKLPSKMIIGKHVDSKKFKTSYFTSHNNSVTVEIKGGRKFSSSSSLPHKINTQISTIDEFNEKISLL KKAASFAKSEEYRSNVTNFTPTVEVTEQQAKAETSTNINSEQTIKNNSHQSSSNTIETTQEQKQNDDLSLNITPVEAITQ LEPNQKILQNQQNSSSISLNSIISKPQNKSSIENNVEFETEASTKSSAIWTKKNNSAKPKKSDIYQMLDSDSKSKTRSFA AIKRARDKEKRKLQNNDLTKKIYREVIIPDTITVNELALRMSEKLSDVIQSLLKLGIKANINQSIDVDTAELIAISLGHS VKRIQDSDVENILHSDKDTQESLLPRAPVITVMGHVDHGKTCLLDALRSTDVISTEAGGITQHIGAYKVNLPNNKSITFI DTPGHEAFSEIRTRGAMVTDIVVLVIAANDGIKPQTIEAINHAKAAKVPILVAINKIDAPDANPDKVKNALLAHNIVPED LGGETLVVPISALKKINLDKLEEAILLLADMLELKANPNALASGTVIESQVDHKSGVIATILVQRGTLKIGDILIAGNGF GKVKRMINDKNQQVNYAYPSDPVKILGLSQIPNAGDAVAVVQNEKQARSIVDYRIRKAKEEQDLKVHNISLEELLKQASA NQCKELSLILKTDVHGSLEAIVASINKIVNDEVKIKILHAAVGVINESDIILANASNATILGFNVKIDSAASIKAERNKT NIKYYSIIYDLIDYVKSAVSGMLSPIIHEEYTGSAEVRAVFNITKVGKIAGCYVTKGYIQRNSKVKLLRNNEVIFSGPLQ TLKRFKEHTKEVKEGFECGIELANYYDINVGDIIEAFIVTEEKAKL >Mature_845_residues TDKHNEEGKDKKLKLPSKMIIGKHVDSKKFKTSYFTSHNNSVTVEIKGGRKFSSSSSLPHKINTQISTIDEFNEKISLLK KAASFAKSEEYRSNVTNFTPTVEVTEQQAKAETSTNINSEQTIKNNSHQSSSNTIETTQEQKQNDDLSLNITPVEAITQL EPNQKILQNQQNSSSISLNSIISKPQNKSSIENNVEFETEASTKSSAIWTKKNNSAKPKKSDIYQMLDSDSKSKTRSFAA IKRARDKEKRKLQNNDLTKKIYREVIIPDTITVNELALRMSEKLSDVIQSLLKLGIKANINQSIDVDTAELIAISLGHSV KRIQDSDVENILHSDKDTQESLLPRAPVITVMGHVDHGKTCLLDALRSTDVISTEAGGITQHIGAYKVNLPNNKSITFID TPGHEAFSEIRTRGAMVTDIVVLVIAANDGIKPQTIEAINHAKAAKVPILVAINKIDAPDANPDKVKNALLAHNIVPEDL GGETLVVPISALKKINLDKLEEAILLLADMLELKANPNALASGTVIESQVDHKSGVIATILVQRGTLKIGDILIAGNGFG KVKRMINDKNQQVNYAYPSDPVKILGLSQIPNAGDAVAVVQNEKQARSIVDYRIRKAKEEQDLKVHNISLEELLKQASAN QCKELSLILKTDVHGSLEAIVASINKIVNDEVKIKILHAAVGVINESDIILANASNATILGFNVKIDSAASIKAERNKTN IKYYSIIYDLIDYVKSAVSGMLSPIIHEEYTGSAEVRAVFNITKVGKIAGCYVTKGYIQRNSKVKLLRNNEVIFSGPLQT LKRFKEHTKEVKEGFECGIELANYYDINVGDIIEAFIVTEEKAKL
Specific function: One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 7
COG id: COG0532
COG function: function code J; Translation initiation factor 2 (IF-2; GTPase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IF-2 family [H]
Homologues:
Organism=Homo sapiens, GI53729339, Length=543, Percent_Identity=42.1731123388582, Blast_Score=417, Evalue=1e-116, Organism=Homo sapiens, GI53729337, Length=543, Percent_Identity=42.1731123388582, Blast_Score=417, Evalue=1e-116, Organism=Homo sapiens, GI84043963, Length=130, Percent_Identity=49.2307692307692, Blast_Score=123, Evalue=9e-28, Organism=Homo sapiens, GI157426893, Length=253, Percent_Identity=28.8537549407115, Blast_Score=73, Evalue=1e-12, Organism=Homo sapiens, GI217272894, Length=130, Percent_Identity=34.6153846153846, Blast_Score=68, Evalue=4e-11, Organism=Homo sapiens, GI217272892, Length=130, Percent_Identity=34.6153846153846, Blast_Score=68, Evalue=4e-11, Organism=Escherichia coli, GI1789559, Length=580, Percent_Identity=51.2068965517241, Blast_Score=577, Evalue=1e-166, Organism=Escherichia coli, GI1788922, Length=228, Percent_Identity=28.0701754385965, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI48994988, Length=289, Percent_Identity=30.1038062283737, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI2367247, Length=211, Percent_Identity=29.8578199052133, Blast_Score=66, Evalue=9e-12, Organism=Caenorhabditis elegans, GI71994658, Length=620, Percent_Identity=34.1935483870968, Blast_Score=330, Evalue=2e-90, Organism=Caenorhabditis elegans, GI212656558, Length=568, Percent_Identity=25.7042253521127, Blast_Score=123, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17557151, Length=224, Percent_Identity=31.25, Blast_Score=82, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6324550, Length=641, Percent_Identity=36.1934477379095, Blast_Score=365, Evalue=1e-101, Organism=Saccharomyces cerevisiae, GI6319282, Length=130, Percent_Identity=43.0769230769231, Blast_Score=109, Evalue=1e-24, Organism=Drosophila melanogaster, GI28572034, Length=613, Percent_Identity=38.8254486133768, Blast_Score=403, Evalue=1e-112, Organism=Drosophila melanogaster, GI24656849, Length=130, Percent_Identity=47.6923076923077, Blast_Score=115, Evalue=9e-26, Organism=Drosophila melanogaster, GI160714833, Length=75, Percent_Identity=68, Blast_Score=114, Evalue=3e-25, Organism=Drosophila melanogaster, GI19922690, Length=227, Percent_Identity=29.5154185022026, Blast_Score=70, Evalue=9e-12,
Paralogues:
None
Copy number: 1150 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006847 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000178 - InterPro: IPR015760 - InterPro: IPR023115 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF11987 IF-2; PF04760 IF2_N [H]
EC number: NA
Molecular weight: Translated: 93085; Mature: 92954
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: PS01176 IF2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDKHNEEGKDKKLKLPSKMIIGKHVDSKKFKTSYFTSHNNSVTVEIKGGRKFSSSSSLP CCCCCCCCCCCCEECCCHHHHCCCCCCCCHHHHHEEECCCCEEEEEEECCCEECCCCCCC HKINTQISTIDEFNEKISLLKKAASFAKSEEYRSNVTNFTPTVEVTEQQAKAETSTNINS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHCCCCCC EQTIKNNSHQSSSNTIETTQEQKQNDDLSLNITPVEAITQLEPNQKILQNQQNSSSISLN CHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHCCCCHHHHHCCCCCCCEEHH SIISKPQNKSSIENNVEFETEASTKSSAIWTKKNNSAKPKKSDIYQMLDSDSKSKTRSFA HHHCCCCCCCHHCCCCEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHH AIKRARDKEKRKLQNNDLTKKIYREVIIPDTITVNELALRMSEKLSDVIQSLLKLGIKAN HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC INQSIDVDTAELIAISLGHSVKRIQDSDVENILHSDKDTQESLLPRAPVITVMGHVDHGK CCCCCCCCHHHHHEEHHCCHHHHHCCCHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCH TCLLDALRSTDVISTEAGGITQHIGAYKVNLPNNKSITFIDTPGHEAFSEIRTRGAMVTD HHHHHHHHCCCCEECCCCCHHHCCCEEEEECCCCCEEEEEECCCHHHHHHHHHCCCHHHE IVVLVIAANDGIKPQTIEAINHAKAAKVPILVAINKIDAPDANPDKVKNALLAHNIVPED EEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCC LGGETLVVPISALKKINLDKLEEAILLLADMLELKANPNALASGTVIESQVDHKSGVIAT CCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHCCCCCCEEEE ILVQRGTLKIGDILIAGNGFGKVKRMINDKNQQVNYAYPSDPVKILGLSQIPNAGDAVAV EEEECCCEEECCEEEECCCHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEE VQNEKQARSIVDYRIRKAKEEQDLKVHNISLEELLKQASANQCKELSLILKTDVHGSLEA EECCHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCHHHHEEEEEEECCCCHHHH IVASINKIVNDEVKIKILHAAVGVINESDIILANASNATILGFNVKIDSAASIKAERNKT HHHHHHHHHCCCEEEEEEEHHHCEECCCCEEEEECCCCEEEEEEEEECCCCCCEECCCCC NIKYYSIIYDLIDYVKSAVSGMLSPIIHEEYTGSAEVRAVFNITKVGKIAGCYVTKGYIQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHEEEEEHHHHC RNSKVKLLRNNEVIFSGPLQTLKRFKEHTKEVKEGFECGIELANYYDINVGDIIEAFIVT CCCEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHCC EEKAKL CHHHCC >Mature Secondary Structure TDKHNEEGKDKKLKLPSKMIIGKHVDSKKFKTSYFTSHNNSVTVEIKGGRKFSSSSSLP CCCCCCCCCCCEECCCHHHHCCCCCCCCHHHHHEEECCCCEEEEEEECCCEECCCCCCC HKINTQISTIDEFNEKISLLKKAASFAKSEEYRSNVTNFTPTVEVTEQQAKAETSTNINS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHCCCCCC EQTIKNNSHQSSSNTIETTQEQKQNDDLSLNITPVEAITQLEPNQKILQNQQNSSSISLN CHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHCCCCHHHHHCCCCCCCEEHH SIISKPQNKSSIENNVEFETEASTKSSAIWTKKNNSAKPKKSDIYQMLDSDSKSKTRSFA HHHCCCCCCCHHCCCCEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHH AIKRARDKEKRKLQNNDLTKKIYREVIIPDTITVNELALRMSEKLSDVIQSLLKLGIKAN HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC INQSIDVDTAELIAISLGHSVKRIQDSDVENILHSDKDTQESLLPRAPVITVMGHVDHGK CCCCCCCCHHHHHEEHHCCHHHHHCCCHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCH TCLLDALRSTDVISTEAGGITQHIGAYKVNLPNNKSITFIDTPGHEAFSEIRTRGAMVTD HHHHHHHHCCCCEECCCCCHHHCCCEEEEECCCCCEEEEEECCCHHHHHHHHHCCCHHHE IVVLVIAANDGIKPQTIEAINHAKAAKVPILVAINKIDAPDANPDKVKNALLAHNIVPED EEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCC LGGETLVVPISALKKINLDKLEEAILLLADMLELKANPNALASGTVIESQVDHKSGVIAT CCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHCCCCCCEEEE ILVQRGTLKIGDILIAGNGFGKVKRMINDKNQQVNYAYPSDPVKILGLSQIPNAGDAVAV EEEECCCEEECCEEEECCCHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEE VQNEKQARSIVDYRIRKAKEEQDLKVHNISLEELLKQASANQCKELSLILKTDVHGSLEA EECCHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCHHHHEEEEEEECCCCHHHH IVASINKIVNDEVKIKILHAAVGVINESDIILANASNATILGFNVKIDSAASIKAERNKT HHHHHHHHHCCCEEEEEEEHHHCEECCCCEEEEECCCCEEEEEEEEECCCCCCEECCCCC NIKYYSIIYDLIDYVKSAVSGMLSPIIHEEYTGSAEVRAVFNITKVGKIAGCYVTKGYIQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHEEEEEHHHHC RNSKVKLLRNNEVIFSGPLQTLKRFKEHTKEVKEGFECGIELANYYDINVGDIIEAFIVT CCCEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHCC EEKAKL CHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; In phosphorus-containing anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA