| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183419
Identifier: 189183419
GI number: 189183419
Start: 534818
End: 536101
Strand: Reverse
Name: 189183419
Synonym: OTT_0512
Alternate gene names: NA
Gene position: 536101-534818 (Counterclockwise)
Preceding gene: 189183420
Following gene: 189183418
Centisome position: 26.69
GC content: 31.46
Gene sequence:
>1284_bases ATGCCAATCTATAAAAAAACAACTTTTTTTGTTTTACTTTTTACACTGCTAAGCAGTACTACTATTTATGCTAATGCTAA TTATACAGTAGTTAATAATTGCATTATTCAAAATAGAAAATTTCCAATTACTATCTCAACTGACAACATTGATAATGCTT TAAGCGCAGTGAATATTCTTGGGTTAATAAATGATAAATATGGCTTGAGTGATAGCATTATTGGTAGAATTATAGCAGGA TATCCTAGCTTTTATATAGTATTACTTAATCATGAGGTTGTAGGGCATGGTCGCAGAGCATATGAATTTGGTGGTACAGT AGATGGATATACACTAAGATTATTTAGCGCTGTTACTCATTATAATCTTTCACCAAATTCCCATCCACAACAACACAACG CAATAACTCTTGCAGGAGTACAAGTTAATACTTGCTTAGCGTCTAGAATTATTAATCAATTGCTACAAACAAAACAACCT TTAAGTCCAGTTACTGCTTGGAGTTATATTTTTAGCACTGGAAATCAGCTTTGGTATGTATTACATGATGTTGTATTTGA ACAAACTCATAAGTTAGGAATAGGTGATATTAGAAGTCACATACTAAGTATGGAAAAGATTTATGGAAAAACTTCAATAC AGGATAAAATTCGTTCTTTATGTTTTTTAGATCTTATGAATCCAATGTTATTCGCATCCTTTTATACAATAGCATCTGGT CAAAACATACAAGTTCCTATGATACCTCTAGGACAGATAAATGGGTTGGGACAAATTGGATTTATGCCTTCAGTAAATCT TATCTTAACTCCATATAACGTACTAGAAAAACGAATAACAGTGCATATTAACACTGAATATACTCCTATAAAAATAGCAT TTGGATTTGGGCAAGAGCTAAAATCAAATGATCCTGTATATCATACTTTAGATGATTCTGTATGTGATTCTTCAAATTCG TGGTATTTTATTAAAAAAGATTCAACTCCTTCTAAAGTACATGATACTTATTACTTTGAACTTAGCGTTGCACGCTTTTT CTCTATAAGCAAAGTTGATTTAGGTGGAAGTTTAATAATATGGAGACAACCAGAGTTAATAACTCCAGTTCCAAGGCATG CTGAAATTAAAAATGGTATCATGGGATTATTAAATTTAACTTTTAACATAGATGACAGGTTTAGCATTTTCGCTGAAGCA GGTTATAAAACTAAGGGGTTCATTTTAGACAGACCAGTAGATGAAGGCCCTCTCATAAATTTTGCAATTCAGTGTTTAGT ATAG
Upstream 100 bases:
>100_bases AGCTTGTAATATTTTTTACTTTTTCATTGCTTAAACTATCTATCTTGATAGCATAAAATCAATCTAAAATTGAAGAATTG ATTTTAAAGCTAACATTACT
Downstream 100 bases:
>100_bases AAAATACAGGCAATTCTTTTGCTAGGTCTATTTCACAACTCAATCAAGCTTGATGTTATAAATATAGCTTAATTAGGAAG GTATTTACACATTATTTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MPIYKKTTFFVLLFTLLSSTTIYANANYTVVNNCIIQNRKFPITISTDNIDNALSAVNILGLINDKYGLSDSIIGRIIAG YPSFYIVLLNHEVVGHGRRAYEFGGTVDGYTLRLFSAVTHYNLSPNSHPQQHNAITLAGVQVNTCLASRIINQLLQTKQP LSPVTAWSYIFSTGNQLWYVLHDVVFEQTHKLGIGDIRSHILSMEKIYGKTSIQDKIRSLCFLDLMNPMLFASFYTIASG QNIQVPMIPLGQINGLGQIGFMPSVNLILTPYNVLEKRITVHINTEYTPIKIAFGFGQELKSNDPVYHTLDDSVCDSSNS WYFIKKDSTPSKVHDTYYFELSVARFFSISKVDLGGSLIIWRQPELITPVPRHAEIKNGIMGLLNLTFNIDDRFSIFAEA GYKTKGFILDRPVDEGPLINFAIQCLV
Sequences:
>Translated_427_residues MPIYKKTTFFVLLFTLLSSTTIYANANYTVVNNCIIQNRKFPITISTDNIDNALSAVNILGLINDKYGLSDSIIGRIIAG YPSFYIVLLNHEVVGHGRRAYEFGGTVDGYTLRLFSAVTHYNLSPNSHPQQHNAITLAGVQVNTCLASRIINQLLQTKQP LSPVTAWSYIFSTGNQLWYVLHDVVFEQTHKLGIGDIRSHILSMEKIYGKTSIQDKIRSLCFLDLMNPMLFASFYTIASG QNIQVPMIPLGQINGLGQIGFMPSVNLILTPYNVLEKRITVHINTEYTPIKIAFGFGQELKSNDPVYHTLDDSVCDSSNS WYFIKKDSTPSKVHDTYYFELSVARFFSISKVDLGGSLIIWRQPELITPVPRHAEIKNGIMGLLNLTFNIDDRFSIFAEA GYKTKGFILDRPVDEGPLINFAIQCLV >Mature_426_residues PIYKKTTFFVLLFTLLSSTTIYANANYTVVNNCIIQNRKFPITISTDNIDNALSAVNILGLINDKYGLSDSIIGRIIAGY PSFYIVLLNHEVVGHGRRAYEFGGTVDGYTLRLFSAVTHYNLSPNSHPQQHNAITLAGVQVNTCLASRIINQLLQTKQPL SPVTAWSYIFSTGNQLWYVLHDVVFEQTHKLGIGDIRSHILSMEKIYGKTSIQDKIRSLCFLDLMNPMLFASFYTIASGQ NIQVPMIPLGQINGLGQIGFMPSVNLILTPYNVLEKRITVHINTEYTPIKIAFGFGQELKSNDPVYHTLDDSVCDSSNSW YFIKKDSTPSKVHDTYYFELSVARFFSISKVDLGGSLIIWRQPELITPVPRHAEIKNGIMGLLNLTFNIDDRFSIFAEAG YKTKGFILDRPVDEGPLINFAIQCLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47929; Mature: 47798
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIYKKTTFFVLLFTLLSSTTIYANANYTVVNNCIIQNRKFPITISTDNIDNALSAVNIL CCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEECCEEEEEEECCCCHHHHHHHHHE GLINDKYGLSDSIIGRIIAGYPSFYIVLLNHEVVGHGRRAYEFGGTVDGYTLRLFSAVTH EEECCCCCCCHHHHHHHHHCCCEEEEEEEECHHHCCCCEEEECCCCCCCHHHHEEHHHHH YNLSPNSHPQQHNAITLAGVQVNTCLASRIINQLLQTKQPLSPVTAWSYIFSTGNQLWYV CCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEHH LHDVVFEQTHKLGIGDIRSHILSMEKIYGKTSIQDKIRSLCFLDLMNPMLFASFYTIASG HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QNIQVPMIPLGQINGLGQIGFMPSVNLILTPYNVLEKRITVHINTEYTPIKIAFGFGQEL CCEEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHCCEEEEEEECCCCEEEEEECCCCHH KSNDPVYHTLDDSVCDSSNSWYFIKKDSTPSKVHDTYYFELSVARFFSISKVDLGGSLII CCCCCEEEECCHHHCCCCCCEEEEECCCCCCCCCCEEEEEEEEHHHEEEEEECCCCEEEE WRQPELITPVPRHAEIKNGIMGLLNLTFNIDDRFSIFAEAGYKTKGFILDRPVDEGPLIN EECCCCCCCCCCCHHHHHCCEEEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCEEE FAIQCLV EEEEEEC >Mature Secondary Structure PIYKKTTFFVLLFTLLSSTTIYANANYTVVNNCIIQNRKFPITISTDNIDNALSAVNIL CCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEECCEEEEEEECCCCHHHHHHHHHE GLINDKYGLSDSIIGRIIAGYPSFYIVLLNHEVVGHGRRAYEFGGTVDGYTLRLFSAVTH EEECCCCCCCHHHHHHHHHCCCEEEEEEEECHHHCCCCEEEECCCCCCCHHHHEEHHHHH YNLSPNSHPQQHNAITLAGVQVNTCLASRIINQLLQTKQPLSPVTAWSYIFSTGNQLWYV CCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEHH LHDVVFEQTHKLGIGDIRSHILSMEKIYGKTSIQDKIRSLCFLDLMNPMLFASFYTIASG HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QNIQVPMIPLGQINGLGQIGFMPSVNLILTPYNVLEKRITVHINTEYTPIKIAFGFGQEL CCEEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHCCEEEEEEECCCCEEEEEECCCCHH KSNDPVYHTLDDSVCDSSNSWYFIKKDSTPSKVHDTYYFELSVARFFSISKVDLGGSLII CCCCCEEEECCHHHCCCCCCEEEEECCCCCCCCCCEEEEEEEEHHHEEEEEECCCCEEEE WRQPELITPVPRHAEIKNGIMGLLNLTFNIDDRFSIFAEAGYKTKGFILDRPVDEGPLIN EECCCCCCCCCCCHHHHHCCEEEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCEEE FAIQCLV EEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA