| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183371
Identifier: 189183371
GI number: 189183371
Start: 488519
End: 490306
Strand: Reverse
Name: 189183371
Synonym: OTT_0464
Alternate gene names: NA
Gene position: 490306-488519 (Counterclockwise)
Preceding gene: 189183376
Following gene: 189183370
Centisome position: 24.41
GC content: 30.26
Gene sequence:
>1788_bases ATGGGACATGTCATTAAAGCAGCAACAAGAATATTTGCAGGAGTGCATAATTTTAGTAAAGCTTTAGCATCTAACAAAAG CACATTGGCAAATAGTCATCATTGGTTTAATATACAAAATTATTCTAATTCTTTTTCTACAGTTTCAACAAATAGTCATG TTGTTAATCAAACTGAGAGTACATCAATACAAGATTATTCAAAGCACAGTGATTCAAGTAAGCAATCTCAACTGTTTAAA CTAGGTGAGTCAGAAAAGAACGCTCAATCATTAGCAGTTTTAATAAAATTAATGAGCAGCAGCAATGTAAATCATATAGA CAATGTGGGTGAAAGTTTTATTCACAAGATTGGAAAAAATAGTAAGCTAAATTTACTAGACAAGTATTATCTTTTCTGTC AGCTAAAAGCTAAAGGGGCAAATTTTGATCAAGAAAATAATGTTGGTAATACAGTTGCTAATATTTTGCTTGAAAAATAT ATAGAAACTGGAGATTCTAAAATATTATCATATTTTCTGAATAATACAGAAATTTACAGTCCTAATAAAGCATTCTTGCT TTCTCTTATGCGATATATTCAAGAAGCAGGCAATCCTAAGCAGGACGAAATGAATTTATTTGTAAAAACCATCGAAAATC TACCAAAAAAAAATATTCTGCTGAGTAACGGCGAAGAAATGATGGTTTTAAAACTGTTACTGTCTTATGGATTTTCATCA TCTTGTACTTTACATAATCAAGATAAAATATTACATGCAGCCAAAAGTATTATAAATTATTATCCACAAGCTTTAGGAAA AACTGCAGTTGATGAATTTATAAAATATATACAATGCAGTGATACTGTTTCATCATCTGTAGCTCAGTTTGGAGTATTAG TTATACAGCATTTATCTAGTGATGAAGCTTGCAGTCAACGTTTAATATTAGACTCTTTAGCTAAAAAATATTCATATGCA GATAAATCAAAAGTTTTACAATCTGCTATAGAAGCATCAGATTCTGAAGCCCTAAATATTAAAGATTTATCTAATAAAGG AAATACATTTTTGCATGTTCTTAAAAAATCTAGCCTGCAAGACTATCATGAGCTTATTGGTTGTGCTATGGCTTATGGAG CTGATGTTTTACAAAATGATAAAGGTAAAACTATCTTAGACAAAATTGACCTAAAGAGTTATGATGATCAGCTTCTGATA CGTGAAATCACATCAAGTGGTTGTTTAGATAAGTTATGTACTGCAAGTGATGCTATTGGTAAATCTCTCTTTCAAAAAGC AATTAAATTTATGGCAAAAGGAAAGTTGTTTATATTACCAGAAATTAAGAATGCAATTCTAGAGTTTAATCCAAGTCAGG CTTTATCATCTTTAGCAGAAATGTGTAATAACCGCAAAGTTGACTTAAAGACAGCACTGGAACTTATACAAGATCTTAGC GCTAAAACTGATCTAAGTAATTTTGTGATGAATTGTTCGCATAGCACTTTAAAAGAAATATCTAAGTTACCATATTGGCA TGCATTAATTAATTCATTAGAACAAAATGATTGTATAGCTTCATTAACGAGCGCGAATGGAAAATTATATCCTTTATTAG AAAGTACAAAAGAAACTGAATTAAGTAATGTGTCAGCTTTTGAGCGTAAATTTGCTCCTTCTGTACCGGAAGCATTAGAC ATTGATCAGTATTTCTTACATGGGCAAAATTTAATTGTAAATGATAGTACTTCAGAAAATGTTGATATGTACTTACCAAC CATGCAAGCAATTGGTCAGATATCATAA
Upstream 100 bases:
>100_bases TTAATTTTGTGATAGTAGTAAGCTTAAATTAATAGTTTTAGGTTGGCGGTTTCTAAAATCTATTAATATCATGTAACAAT AAAAGCTAGGGAGGTCTTAT
Downstream 100 bases:
>100_bases CGTGCAATGTAAATCTATTTAATGTTAAAGGTTAAGTTAAACGATAAATAACATCAAAAAATAAATTTAGTAAATAACTT CTTAGTCTATTGTTAAACAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 595; Mature: 594
Protein sequence:
>595_residues MGHVIKAATRIFAGVHNFSKALASNKSTLANSHHWFNIQNYSNSFSTVSTNSHVVNQTESTSIQDYSKHSDSSKQSQLFK LGESEKNAQSLAVLIKLMSSSNVNHIDNVGESFIHKIGKNSKLNLLDKYYLFCQLKAKGANFDQENNVGNTVANILLEKY IETGDSKILSYFLNNTEIYSPNKAFLLSLMRYIQEAGNPKQDEMNLFVKTIENLPKKNILLSNGEEMMVLKLLLSYGFSS SCTLHNQDKILHAAKSIINYYPQALGKTAVDEFIKYIQCSDTVSSSVAQFGVLVIQHLSSDEACSQRLILDSLAKKYSYA DKSKVLQSAIEASDSEALNIKDLSNKGNTFLHVLKKSSLQDYHELIGCAMAYGADVLQNDKGKTILDKIDLKSYDDQLLI REITSSGCLDKLCTASDAIGKSLFQKAIKFMAKGKLFILPEIKNAILEFNPSQALSSLAEMCNNRKVDLKTALELIQDLS AKTDLSNFVMNCSHSTLKEISKLPYWHALINSLEQNDCIASLTSANGKLYPLLESTKETELSNVSAFERKFAPSVPEALD IDQYFLHGQNLIVNDSTSENVDMYLPTMQAIGQIS
Sequences:
>Translated_595_residues MGHVIKAATRIFAGVHNFSKALASNKSTLANSHHWFNIQNYSNSFSTVSTNSHVVNQTESTSIQDYSKHSDSSKQSQLFK LGESEKNAQSLAVLIKLMSSSNVNHIDNVGESFIHKIGKNSKLNLLDKYYLFCQLKAKGANFDQENNVGNTVANILLEKY IETGDSKILSYFLNNTEIYSPNKAFLLSLMRYIQEAGNPKQDEMNLFVKTIENLPKKNILLSNGEEMMVLKLLLSYGFSS SCTLHNQDKILHAAKSIINYYPQALGKTAVDEFIKYIQCSDTVSSSVAQFGVLVIQHLSSDEACSQRLILDSLAKKYSYA DKSKVLQSAIEASDSEALNIKDLSNKGNTFLHVLKKSSLQDYHELIGCAMAYGADVLQNDKGKTILDKIDLKSYDDQLLI REITSSGCLDKLCTASDAIGKSLFQKAIKFMAKGKLFILPEIKNAILEFNPSQALSSLAEMCNNRKVDLKTALELIQDLS AKTDLSNFVMNCSHSTLKEISKLPYWHALINSLEQNDCIASLTSANGKLYPLLESTKETELSNVSAFERKFAPSVPEALD IDQYFLHGQNLIVNDSTSENVDMYLPTMQAIGQIS >Mature_594_residues GHVIKAATRIFAGVHNFSKALASNKSTLANSHHWFNIQNYSNSFSTVSTNSHVVNQTESTSIQDYSKHSDSSKQSQLFKL GESEKNAQSLAVLIKLMSSSNVNHIDNVGESFIHKIGKNSKLNLLDKYYLFCQLKAKGANFDQENNVGNTVANILLEKYI ETGDSKILSYFLNNTEIYSPNKAFLLSLMRYIQEAGNPKQDEMNLFVKTIENLPKKNILLSNGEEMMVLKLLLSYGFSSS CTLHNQDKILHAAKSIINYYPQALGKTAVDEFIKYIQCSDTVSSSVAQFGVLVIQHLSSDEACSQRLILDSLAKKYSYAD KSKVLQSAIEASDSEALNIKDLSNKGNTFLHVLKKSSLQDYHELIGCAMAYGADVLQNDKGKTILDKIDLKSYDDQLLIR EITSSGCLDKLCTASDAIGKSLFQKAIKFMAKGKLFILPEIKNAILEFNPSQALSSLAEMCNNRKVDLKTALELIQDLSA KTDLSNFVMNCSHSTLKEISKLPYWHALINSLEQNDCIASLTSANGKLYPLLESTKETELSNVSAFERKFAPSVPEALDI DQYFLHGQNLIVNDSTSENVDMYLPTMQAIGQIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66080; Mature: 65949
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGHVIKAATRIFAGVHNFSKALASNKSTLANSHHWFNIQNYSNSFSTVSTNSHVVNQTES CCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCCCCCCCEECCCCCEECCCCC TSIQDYSKHSDSSKQSQLFKLGESEKNAQSLAVLIKLMSSSNVNHIDNVGESFIHKIGKN CCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC SKLNLLDKYYLFCQLKAKGANFDQENNVGNTVANILLEKYIETGDSKILSYFLNNTEIYS CCCHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEC PNKAFLLSLMRYIQEAGNPKQDEMNLFVKTIENLPKKNILLSNGEEMMVLKLLLSYGFSS CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCC SCTLHNQDKILHAAKSIINYYPQALGKTAVDEFIKYIQCSDTVSSSVAQFGVLVIQHLSS CCEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DEACSQRLILDSLAKKYSYADKSKVLQSAIEASDSEALNIKDLSNKGNTFLHVLKKSSLQ CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEHCCCCCCCHHHHHHHHHHHH DYHELIGCAMAYGADVLQNDKGKTILDKIDLKSYDDQLLIREITSSGCLDKLCTASDAIG HHHHHHHHHHHHCHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH KSLFQKAIKFMAKGKLFILPEIKNAILEFNPSQALSSLAEMCNNRKVDLKTALELIQDLS HHHHHHHHHHHHCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AKTDLSNFVMNCSHSTLKEISKLPYWHALINSLEQNDCIASLTSANGKLYPLLESTKETE HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHCCCCEEEECHHCCCHHH LSNVSAFERKFAPSVPEALDIDQYFLHGQNLIVNDSTSENVDMYLPTMQAIGQIS HHHHHHHHHHCCCCCCCHHCCHHHHHCCCCEEEECCCCCCCEEEEHHHHHCCCCC >Mature Secondary Structure GHVIKAATRIFAGVHNFSKALASNKSTLANSHHWFNIQNYSNSFSTVSTNSHVVNQTES CHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCCCCCCCEECCCCCEECCCCC TSIQDYSKHSDSSKQSQLFKLGESEKNAQSLAVLIKLMSSSNVNHIDNVGESFIHKIGKN CCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC SKLNLLDKYYLFCQLKAKGANFDQENNVGNTVANILLEKYIETGDSKILSYFLNNTEIYS CCCHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEC PNKAFLLSLMRYIQEAGNPKQDEMNLFVKTIENLPKKNILLSNGEEMMVLKLLLSYGFSS CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCC SCTLHNQDKILHAAKSIINYYPQALGKTAVDEFIKYIQCSDTVSSSVAQFGVLVIQHLSS CCEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DEACSQRLILDSLAKKYSYADKSKVLQSAIEASDSEALNIKDLSNKGNTFLHVLKKSSLQ CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEHCCCCCCCHHHHHHHHHHHH DYHELIGCAMAYGADVLQNDKGKTILDKIDLKSYDDQLLIREITSSGCLDKLCTASDAIG HHHHHHHHHHHHCHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH KSLFQKAIKFMAKGKLFILPEIKNAILEFNPSQALSSLAEMCNNRKVDLKTALELIQDLS HHHHHHHHHHHHCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AKTDLSNFVMNCSHSTLKEISKLPYWHALINSLEQNDCIASLTSANGKLYPLLESTKETE HHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHCCCCEEEECHHCCCHHH LSNVSAFERKFAPSVPEALDIDQYFLHGQNLIVNDSTSENVDMYLPTMQAIGQIS HHHHHHHHHHCCCCCCCHHCCHHHHHCCCCEEEECCCCCCCEEEEHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA