Definition Orientia tsutsugamushi str. Ikeda, complete genome.
Accession NC_010793
Length 2,008,987

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The map label for this gene is 189183370

Identifier: 189183370

GI number: 189183370

Start: 487195

End: 488385

Strand: Reverse

Name: 189183370

Synonym: OTT_0463

Alternate gene names: NA

Gene position: 488385-487195 (Counterclockwise)

Preceding gene: 189183371

Following gene: 189183369

Centisome position: 24.31

GC content: 30.98

Gene sequence:

>1191_bases
ATGATTAAAGGTTATTTACATAAAATTCTTGATAAAGTTAATATTCTTTCTAATAAAAAAGCCTGCTACAAAAATTTTCA
GCCTTTTGACTTACAATATGTTGCTAGTAGCAATTATACTACAGAAGCTACAGTTAGCGCTTATTTTCAAAATGTTATTG
TGTATCGGTGTGTTAATTTGATAGCTAACTCTGCAAGTCATGTGCCATGGTATATAAAAAAAAAGAAACAGCTTACATAT
GAAAGACTTTTACATCATCCTATACTTGATTTACTACAACGTCCAAATTACAGCGTATCTGGTGCAGATTTTTTTTCTGA
GTTGATTATTAATAAACTACTTACAGGTAATGCTTTTATATTGGCTACAGGTATAAAGGATATGTTACCTAAAGAACTAT
ATTTACTCAATATTAATGATGTAGAAGTACAAGAACAAGCTGGGCAAGTGATAGGATATCGCTATCCTAGCAATAGTAAC
AATTTTTATCGAATTAGCAATACACATGACAAGTGTCCGATATTACATATGAAAAATTATAATCCATTGAGTAAAAAGCA
TGGTATGTCTTGCTTAGATGCAGCATCTATGCCAATAAATTTATATAATCAGGTAGTGCAATGGAATTATGCTTTATTAA
AAAATGGAGCTCGTCCTAGTGGAGCTCTGATATTAAAGGATAGTAATTCTTATTTAAGTGAAGAGCAATTTGAAAGATTG
AGAGATCAATTATTACAAAAATATACTAGCTCATCAAATTCTGGTGCACCTCTGTTATTAGAAGGAGGACTTGATTGGAA
AGAAATGAGTATTAATCCCAAAGATATGGATTTTATGGAATCTAAGAATTCTGCTGCTAGAGAAATCGCATTAGCATTTG
GCGTACCTCCGCAATTATTAGGAATTAATGGTGATAATACATATAGCAATATGCAGGAGGCTAGATTAGCATTATGGGAA
GAAACGCTGATTCCATTACTTGACCGTATTGCTGATTCGTTAACTATGTGGTTCTCAAAATTATTTAAAGAAAATATTAT
TATTGATTTTGATAGAGACTGTATATCAGCTTTAACAGAAAAACGAGAAAATTTATGGTCTAAAATTTCTACAGCTAATT
TTATGACAATTAATGAGAAGAGACGCATAATATCTCTTCCTCCGATAGATGGAGGAGATAAATTAATATGA

Upstream 100 bases:

>100_bases
AAGTTAAACGATAAATAACATCAAAAAATAAATTTAGTAAATAACTTCTTAGTCTATTGTTAAACACTGTTATTCTATAA
TTATTTAAGTAGTGGTAGCA

Downstream 100 bases:

>100_bases
GTTTTGTACATAGAGACTATGAATGAGCAATTAATTAAACTATCGCAGCTTAGCATTCACTTAGTTAATATTTTAGACAA
GGAGTTGATTAACCTGCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY
ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN
NFYRISNTHDKCPILHMKNYNPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE
ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI

Sequences:

>Translated_396_residues
MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY
ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN
NFYRISNTHDKCPILHMKNYNPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE
ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
>Mature_396_residues
MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY
ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN
NFYRISNTHDKCPILHMKNYNPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE
ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 45203; Mature: 45203

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNL
CCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
IANSASHVPWYIKKKKQLTYERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFI
HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
LATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSNNFYRISNTHDKCPILHMKNY
EECCHHHHCCCCEEEECCCCCHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCEEEECCC
NPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
CCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLL
HHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHEE
GINGDNTYSNMQEARLALWEETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH
KRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
HHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNL
CCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
IANSASHVPWYIKKKKQLTYERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFI
HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
LATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSNNFYRISNTHDKCPILHMKNY
EECCHHHHCCCCEEEECCCCCHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCEEEECCC
NPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL
CCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLL
HHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHEE
GINGDNTYSNMQEARLALWEETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH
KRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
HHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA