| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183370
Identifier: 189183370
GI number: 189183370
Start: 487195
End: 488385
Strand: Reverse
Name: 189183370
Synonym: OTT_0463
Alternate gene names: NA
Gene position: 488385-487195 (Counterclockwise)
Preceding gene: 189183371
Following gene: 189183369
Centisome position: 24.31
GC content: 30.98
Gene sequence:
>1191_bases ATGATTAAAGGTTATTTACATAAAATTCTTGATAAAGTTAATATTCTTTCTAATAAAAAAGCCTGCTACAAAAATTTTCA GCCTTTTGACTTACAATATGTTGCTAGTAGCAATTATACTACAGAAGCTACAGTTAGCGCTTATTTTCAAAATGTTATTG TGTATCGGTGTGTTAATTTGATAGCTAACTCTGCAAGTCATGTGCCATGGTATATAAAAAAAAAGAAACAGCTTACATAT GAAAGACTTTTACATCATCCTATACTTGATTTACTACAACGTCCAAATTACAGCGTATCTGGTGCAGATTTTTTTTCTGA GTTGATTATTAATAAACTACTTACAGGTAATGCTTTTATATTGGCTACAGGTATAAAGGATATGTTACCTAAAGAACTAT ATTTACTCAATATTAATGATGTAGAAGTACAAGAACAAGCTGGGCAAGTGATAGGATATCGCTATCCTAGCAATAGTAAC AATTTTTATCGAATTAGCAATACACATGACAAGTGTCCGATATTACATATGAAAAATTATAATCCATTGAGTAAAAAGCA TGGTATGTCTTGCTTAGATGCAGCATCTATGCCAATAAATTTATATAATCAGGTAGTGCAATGGAATTATGCTTTATTAA AAAATGGAGCTCGTCCTAGTGGAGCTCTGATATTAAAGGATAGTAATTCTTATTTAAGTGAAGAGCAATTTGAAAGATTG AGAGATCAATTATTACAAAAATATACTAGCTCATCAAATTCTGGTGCACCTCTGTTATTAGAAGGAGGACTTGATTGGAA AGAAATGAGTATTAATCCCAAAGATATGGATTTTATGGAATCTAAGAATTCTGCTGCTAGAGAAATCGCATTAGCATTTG GCGTACCTCCGCAATTATTAGGAATTAATGGTGATAATACATATAGCAATATGCAGGAGGCTAGATTAGCATTATGGGAA GAAACGCTGATTCCATTACTTGACCGTATTGCTGATTCGTTAACTATGTGGTTCTCAAAATTATTTAAAGAAAATATTAT TATTGATTTTGATAGAGACTGTATATCAGCTTTAACAGAAAAACGAGAAAATTTATGGTCTAAAATTTCTACAGCTAATT TTATGACAATTAATGAGAAGAGACGCATAATATCTCTTCCTCCGATAGATGGAGGAGATAAATTAATATGA
Upstream 100 bases:
>100_bases AAGTTAAACGATAAATAACATCAAAAAATAAATTTAGTAAATAACTTCTTAGTCTATTGTTAAACACTGTTATTCTATAA TTATTTAAGTAGTGGTAGCA
Downstream 100 bases:
>100_bases GTTTTGTACATAGAGACTATGAATGAGCAATTAATTAAACTATCGCAGCTTAGCATTCACTTAGTTAATATTTTAGACAA GGAGTTGATTAACCTGCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN NFYRISNTHDKCPILHMKNYNPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
Sequences:
>Translated_396_residues MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN NFYRISNTHDKCPILHMKNYNPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI >Mature_396_residues MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNLIANSASHVPWYIKKKKQLTY ERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFILATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSN NFYRISNTHDKCPILHMKNYNPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLLGINGDNTYSNMQEARLALWE ETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTEKRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI
Specific function: Unknown
COG id: COG4695
COG function: function code S; Phage-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage portal family. HK97 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006944 - InterPro: IPR006427 [H]
Pfam domain/function: PF04860 Phage_portal [H]
EC number: NA
Molecular weight: Translated: 45203; Mature: 45203
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNL CCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH IANSASHVPWYIKKKKQLTYERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFI HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE LATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSNNFYRISNTHDKCPILHMKNY EECCHHHHCCCCEEEECCCCCHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCEEEECCC NPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL CCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLL HHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHEE GINGDNTYSNMQEARLALWEETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTE ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH KRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI HHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCC >Mature Secondary Structure MIKGYLHKILDKVNILSNKKACYKNFQPFDLQYVASSNYTTEATVSAYFQNVIVYRCVNL CCHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH IANSASHVPWYIKKKKQLTYERLLHHPILDLLQRPNYSVSGADFFSELIINKLLTGNAFI HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE LATGIKDMLPKELYLLNINDVEVQEQAGQVIGYRYPSNSNNFYRISNTHDKCPILHMKNY EECCHHHHCCCCEEEECCCCCHHHHHCCCEEEEECCCCCCCEEEECCCCCCCCEEEECCC NPLSKKHGMSCLDAASMPINLYNQVVQWNYALLKNGARPSGALILKDSNSYLSEEQFERL CCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH RDQLLQKYTSSSNSGAPLLLEGGLDWKEMSINPKDMDFMESKNSAAREIALAFGVPPQLL HHHHHHHHHCCCCCCCCEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHEE GINGDNTYSNMQEARLALWEETLIPLLDRIADSLTMWFSKLFKENIIIDFDRDCISALTE ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHH KRENLWSKISTANFMTINEKRRIISLPPIDGGDKLI HHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA