| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183265
Identifier: 189183265
GI number: 189183265
Start: 366295
End: 367119
Strand: Direct
Name: 189183265
Synonym: OTT_0358
Alternate gene names: NA
Gene position: 366295-367119 (Clockwise)
Preceding gene: 189183264
Following gene: 189183266
Centisome position: 18.23
GC content: 33.21
Gene sequence:
>825_bases TTGCATAACGGAGTAAGTAATATAAGCAGCTCATACGTAGCTATGACAAGGCATATAAAGAGCTTAAAGTTATATTGCAA TAATGAAGCAACTAAAAGCATTAACAGCTTAATAAATCAGCTCAGCAGACCAAATGAGAAATCAGCTAGCATAACTCTGA AAACTGCTCATGATTTTGAGAAAGAACGGACAAAGCCAACTGTTTTTAGTACACTTGAAAACTGGTTTAAGTCTATAATC AATGATATCAATGATAGATCTCATGTGAATGAAGAATATTATTACTTTACCGCTAAACCAGAGCAAGAAGCTAAAGTAGA AAAAGTCCAGCAAGAGAATAGCATAAAGCAATGCACCACCAAAGATATTTCTACTCCATTGTTTATGCAAATCAAAGAAC AAAGACAATATGATTATGATGTAACCATTCTGTCAGCAGAAGGAAAAACGATATCAAGTTTTCAGGAAGCTGGCATTGAT AGCAGAATGGTATATAGCTCAAATGTAAATAATTTAAAGTATTATCAGCCATTTCAAGGAGAAAAGATTCTTATAGCTGC AAATAATGATAAACAAAATAAAGAATATGTAAGCACTATAAACGAGGCTGTAAAAGTACTGACAAGCAAAGGAGCAATTA CTAGCATCGTAATTCATTCAGAAGGTGAAGATTTTAACGAAATGCTAAAAAATAAAGGAGCCACAGCTGTTAAGGAGCTT ATGATACCTGAAATCATGAAGTTAATTAATACTCAGAACGTAAAAACAGAGTCTGAACAAGTGGTGAAAACTGACATAGC TCAAAAAATTGGACTTAGGAGATAG
Upstream 100 bases:
>100_bases GAAAAGAAGTGAGTTTTGATTCGGTAAAATACAATTTAAACATGGCTATGCAAGTACTGTTTATAAGGTCCAGGGAGCTT CTATAAAAGATGTATACGTT
Downstream 100 bases:
>100_bases TTCTTACGATCGAAAATTGAATGTAAGCTATTCATTCACAGGGCGAATTACAAAATGAGCTATACATAACAGCTCACAGT GATGTTTGTAATTCGCATTA
Product: putative conjugative transfer protein TraA
Products: NA
Alternate protein names: MobA/MobL Family Protein; Conjugal Transfer Protein TraA; Conjugative Transfer Protein TraI; Conjugative Transfer Protein
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MHNGVSNISSSYVAMTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFEKERTKPTVFSTLENWFKSII NDINDRSHVNEEYYYFTAKPEQEAKVEKVQQENSIKQCTTKDISTPLFMQIKEQRQYDYDVTILSAEGKTISSFQEAGID SRMVYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKEL MIPEIMKLINTQNVKTESEQVVKTDIAQKIGLRR
Sequences:
>Translated_274_residues MHNGVSNISSSYVAMTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFEKERTKPTVFSTLENWFKSII NDINDRSHVNEEYYYFTAKPEQEAKVEKVQQENSIKQCTTKDISTPLFMQIKEQRQYDYDVTILSAEGKTISSFQEAGID SRMVYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKEL MIPEIMKLINTQNVKTESEQVVKTDIAQKIGLRR >Mature_274_residues MHNGVSNISSSYVAMTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFEKERTKPTVFSTLENWFKSII NDINDRSHVNEEYYYFTAKPEQEAKVEKVQQENSIKQCTTKDISTPLFMQIKEQRQYDYDVTILSAEGKTISSFQEAGID SRMVYSSNVNNLKYYQPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKEL MIPEIMKLINTQNVKTESEQVVKTDIAQKIGLRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31225; Mature: 31225
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHNGVSNISSSYVAMTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFE CCCCHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH KERTKPTVFSTLENWFKSIINDINDRSHVNEEYYYFTAKPEQEAKVEKVQQENSIKQCTT HHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH KDISTPLFMQIKEQRQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKYYQPFQG HHCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCEEEECCCCCCCEEECCCCC EKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKEL CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHH MIPEIMKLINTQNVKTESEQVVKTDIAQKIGLRR HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MHNGVSNISSSYVAMTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFE CCCCHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH KERTKPTVFSTLENWFKSIINDINDRSHVNEEYYYFTAKPEQEAKVEKVQQENSIKQCTT HHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH KDISTPLFMQIKEQRQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKYYQPFQG HHCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCEEEECCCCCCCEEECCCCC EKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKEL CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHH MIPEIMKLINTQNVKTESEQVVKTDIAQKIGLRR HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA