Definition Orientia tsutsugamushi str. Ikeda, complete genome.
Accession NC_010793
Length 2,008,987

Click here to switch to the map view.

The map label for this gene is 189183254

Identifier: 189183254

GI number: 189183254

Start: 357141

End: 359009

Strand: Reverse

Name: 189183254

Synonym: OTT_0347

Alternate gene names: NA

Gene position: 359009-357141 (Counterclockwise)

Preceding gene: 189183262

Following gene: 189183253

Centisome position: 17.87

GC content: 29.16

Gene sequence:

>1869_bases
ATGTATGAAGATATACCTGAAACGGATATAAATAAATTATATGATGAGTTTATCAATCATAGTTATGAAATAAATTTAGT
ACAGCATTTTGAATCTGTTAATAGATCAAATAATCATGATAATATAAGTGTATCAGGTAGTACTGATAAAATAGCGTTAT
CTGGATATATAAATCTAATTAGCTGTTATAGCGCTTTATTTAATAAAGATTGTATAGAACTTAAGAATATTACTTATCAT
CTTGAGCAAATGTTCAAAAGCACATTTAATATAAAGCTTTTTAGAGATAAATTTCGCTTTTGGGAAAAATTGTGTAACGG
TGAATGCGTTAATGATGATTTTGGAATTCTTTTTGCAAGTATGCCACAAAATGCTGATACATATACTGATGCAAAATACA
TAACTAAATTAAATTTGCAAACGATTCAAAGTACAGAACTACACAAAAAAATGAAGGATTTAAGACATAGAGGAGAAACT
TATATAGCACTTGATACTGTTCATAATGTTGGTAATGTTTGTTATGGAGTTCATAGTAATATCATAAAATATAATAATAC
GAACCCCGATCACGGATTCTTATATAATCCAACCGGCACAGTATTGTTTAAGCATGATCATATTGCTAAATCAAAAAGCC
CAAATGACTATGATGAACTTAAGAAAATAGATGAACTTAGGAAAAGAGATGGTCTTACAGATGAAGTAATTTTTACAGAA
ATACGCTATATGATTCGTGGTTATTTGGTAATTGATGATATAAGACCAAAAATATGTCATGCCGTTGATGCTGATGAAGT
AATGCTATTAGAGCCTACCCATGTCAATAAAATACCAGTAATAGGTTCTAGTTATGATAATTGTACGACACAAACTGTTA
GAGAGGTATTGAGACATAATCTTCCGGAGGAAATATTTAGAGAGTTATATGATTTTATTACTTTAGTTCCATATTCCAGT
AAATTAGAGATGTTAGAAAGTGTTATAGGTAGGCTGTCATCACCAAATATAAAATATTCTACTGAACTTCCTACTTTAGA
ATCACTTACTGCAGATGAAGTTAAGGAAAATTTTCTTAGCATATTTCAGTTTAAGGTAAACAATATTTTAGGAATTGAGC
CTACAGTTCCAATTTATGACTTACACTTAATTGAATTGACACGACATCTAGACGTTAATGCACCATTAGTATTATACAGT
GAAGGACTAAAATTTTTAGCAGAATCTAAAGCTATATATTTGATCAATGCAGGTGTTATAAAAGCAAATTCTGATCAATC
TCAAGCAATGATAGATACAGAGTTATCAGGTTTGCTTATACCAGAACAGTTTGTTATAAAATATCATGACCACTATAGTA
AAGGATATAATCTTATTACTAAAAAATGTTTGCTTATGGATGTATTTATAAACGAGTCGCTGTTAGATACAACACCTATA
GATGGAAATAACCAATCTAATACTAAAACAAATTTGGACTCTATAAATGCAGAAGATAAAAAATATATAGTACAGAAACT
ATTTTCTAGTACACTGAAAGATCATGACTTTTATTTAACTAAAGAAATACTTTTAGTTATTAAGGAAGTATTGCTTCAAT
CTATTGAACATACTCTTAAAGGGAAGTTCTTAAATAATTCTCCATTACCTTTAGATATTAAAGATGAAATTGTTAATTCA
TGCCGCAGATTTTGTCTTCAAAATCATAAAATAGATTTACCTGTCAGAGCTCAAATAGCTGGAGATAATTACTCTTCGAA
AAACGCATTGAAGAATTTAAAGTTGGACATAGAAACTGCGATAATACCGAAAGGGCATGTTGCAAAAATAAAGCGTGAGT
TAGAGTTAGAACTTCGACAAAAATGTTAA

Upstream 100 bases:

>100_bases
ATAACAGTATATAGTTTTACTAGTGATTATTCATTTAACATATAATAACCGATATTACAGTGTTAACTATTTAGATTATT
AATTTTAAGGGTGAAGTATT

Downstream 100 bases:

>100_bases
GAAATTGCTTTTTAAAGTTTAATTGCACATTAGGTACAAAATTTAAGATATATGGAGTGAAGAATTTTTTTTGTTTATCG
TTATTCTTATCACTAATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 622; Mature: 622

Protein sequence:

>622_residues
MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLISCYSALFNKDCIELKNITYH
LEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFASMPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGET
YIALDTVHNVGNVCYGVHSNIIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE
IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHNLPEEIFRELYDFITLVPYSS
KLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLSIFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYS
EGLKFLAESKAIYLINAGVIKANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI
DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLKGKFLNNSPLPLDIKDEIVNS
CRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETAIIPKGHVAKIKRELELELRQKC

Sequences:

>Translated_622_residues
MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLISCYSALFNKDCIELKNITYH
LEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFASMPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGET
YIALDTVHNVGNVCYGVHSNIIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE
IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHNLPEEIFRELYDFITLVPYSS
KLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLSIFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYS
EGLKFLAESKAIYLINAGVIKANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI
DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLKGKFLNNSPLPLDIKDEIVNS
CRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETAIIPKGHVAKIKRELELELRQKC
>Mature_622_residues
MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLISCYSALFNKDCIELKNITYH
LEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFASMPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGET
YIALDTVHNVGNVCYGVHSNIIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE
IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHNLPEEIFRELYDFITLVPYSS
KLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLSIFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYS
EGLKFLAESKAIYLINAGVIKANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI
DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLKGKFLNNSPLPLDIKDEIVNS
CRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETAIIPKGHVAKIKRELELELRQKC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 71526; Mature: 71526

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLI
CCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCEEEEHHHHHHH
SCYSALFNKDCIELKNITYHLEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFAS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEE
MPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGETYIALDTVHNVGNVCYGVHSN
CCCCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCC
IIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE
EEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHN
HHHHHHCEEEEECCCHHHHHHCCCCCEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHC
LPEEIFRELYDFITLVPYSSKLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLS
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCHHHHHHHHHH
IFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYSEGLKFLAESKAIYLINAGVI
HHHHHHCCEECCCCCCCEEEHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCEEEEEECCEE
KANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI
ECCCCCCHHEEHHCCCCCCCCHHHHHEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GKFLNNSPLPLDIKDEIVNSCRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETA
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCEEEEEEE
IIPKGHVAKIKRELELELRQKC
ECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLI
CCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCEEEEHHHHHHH
SCYSALFNKDCIELKNITYHLEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFAS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEE
MPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGETYIALDTVHNVGNVCYGVHSN
CCCCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCC
IIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE
EEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHN
HHHHHHCEEEEECCCHHHHHHCCCCCEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHC
LPEEIFRELYDFITLVPYSSKLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLS
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCHHHHHHHHHH
IFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYSEGLKFLAESKAIYLINAGVI
HHHHHHCCEECCCCCCCEEEHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCEEEEEECCEE
KANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI
ECCCCCCHHEEHHCCCCCCCCHHHHHEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GKFLNNSPLPLDIKDEIVNSCRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETA
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCEEEEEEE
IIPKGHVAKIKRELELELRQKC
ECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA