| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183178
Identifier: 189183178
GI number: 189183178
Start: 270468
End: 270995
Strand: Reverse
Name: 189183178
Synonym: OTT_0271
Alternate gene names: NA
Gene position: 270995-270468 (Counterclockwise)
Preceding gene: 189183179
Following gene: 189183175
Centisome position: 13.49
GC content: 28.98
Gene sequence:
>528_bases ATGCGTCCTGTAGTATTCGATTTTTTAACTAATAGTTGTAATATTATTAGTAACAATAATGACACGATATTTTATAACTT TATTGGAAATATCATTCCGCCAGAATGGAGAAAGCTAACTGGAGATAATGGAAAAGCATTAAGCAAGACATCTAAACAGC TTTTATCATTTATAGTATTTAGACTATATATCTATTACAACAAAGATATAGATGAATTACAGGAAAGTTATCAGCTTTAT GAGGATAAGCTAAATGTTGGTCAAAGAAGAGTTAGGCAATGCTTAGTAGAATTAAGAGATGCAGGTTTTATTGAAGTTGA AAATAGGACAATAATTAAAGACAATGTTAAGTTACGTAATGTCCCTTGCATAAAAATTCTGAAAAATTTTCAGCACTATA GTGAAAAAGGAAAAGAAGAAAATATAGCCTTACCAGAAAAAAATTTTCGTCCCAACCTGAAAGAAATTTCAGGGACATAT AGATATATAAAAATATCTAAAAGATCTGGTTCTGATCTAGACAAGTAA
Upstream 100 bases:
>100_bases TAAAAATTATTTTCAACCTTTGGCATAAAAATTTGATGGTAATCTGTAAAAAAATTATTTTCTAAAACACCTACTATAGC TGTATTTTTGGAGGTGAAAA
Downstream 100 bases:
>100_bases TATTCGTCACGATATATAAGCATTACAATATCGGCATCTTGTTCAATGGAGCCTGATTCTCGTAGATCTGATAGTAGAGG CTTTTTATCTGACCTTTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MRPVVFDFLTNSCNIISNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLYIYYNKDIDELQESYQLY EDKLNVGQRRVRQCLVELRDAGFIEVENRTIIKDNVKLRNVPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEISGTY RYIKISKRSGSDLDK
Sequences:
>Translated_175_residues MRPVVFDFLTNSCNIISNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLYIYYNKDIDELQESYQLY EDKLNVGQRRVRQCLVELRDAGFIEVENRTIIKDNVKLRNVPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEISGTY RYIKISKRSGSDLDK >Mature_175_residues MRPVVFDFLTNSCNIISNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLYIYYNKDIDELQESYQLY EDKLNVGQRRVRQCLVELRDAGFIEVENRTIIKDNVKLRNVPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEISGTY RYIKISKRSGSDLDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20594; Mature: 20594
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPVVFDFLTNSCNIISNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVF CCCEEEEECCCCCEEEECCCCEEEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH RLYIYYNKDIDELQESYQLYEDKLNVGQRRVRQCLVELRDAGFIEVENRTIIKDNVKLRN HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCEECC VPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEISGTYRYIKISKRSGSDLDK CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCC >Mature Secondary Structure MRPVVFDFLTNSCNIISNNNDTIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVF CCCEEEEECCCCCEEEECCCCEEEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH RLYIYYNKDIDELQESYQLYEDKLNVGQRRVRQCLVELRDAGFIEVENRTIIKDNVKLRN HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCEECC VPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEISGTYRYIKISKRSGSDLDK CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA