| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is leuS [H]
Identifier: 189183152
GI number: 189183152
Start: 232416
End: 234935
Strand: Reverse
Name: leuS [H]
Synonym: OTT_0245
Alternate gene names: 189183152
Gene position: 234935-232416 (Counterclockwise)
Preceding gene: 189183153
Following gene: 189183151
Centisome position: 11.69
GC content: 31.35
Gene sequence:
>2520_bases ATGGACTTAGTAAAAATTGAAAAAAAGTGGCAAGAAATCTGGGAGCAGAATGAGGTATTTAAAGTAAAAGAGATTTTAAA TAAGATCAAACGTTATATATTACCGATGTTTCCTTATCCATCTGGTAAGGCTCATGTAGGACATGTACGTAACTATACAA TATGTGATGTTATTGCGAGGTTTGAACGATCTCAAGGGCATAATGTATTGCATGCTATGGGTTGGGATGCATTTGGATTA CCAGCCGAAAATGCTGCAATGCAAAATAATACTCACCCAAATAGTTGGGTAAATAGCAACGTTGATGTTATGAAGCGACA ACTTAAGGCAATTGGATTGTCTTATGATTGGAGTCGCGAAATAATTACTTGCTCACCACAATATTATGTTCATGAACAGA GATTTTTTCTTGAAATGCTGAAAAAAGGTCTTGTATATCAAAAAGAATCATTAGTTAATTGGGATCCTGTTGATCAAACA GTTCTTGCTAATGAACAAGTAATTAATGGCAAAGGATGGAGATCAGGAGCAATAATTGAATATCGTAATTTAAAGCAGTG GTTTATTAAAATTACTAACTATGCTGATGCTTTATTAAAAGGCCTTGATAGCTTACAAAGTTGGCCAGAAAGTGTAAAAA CAATGCAAAAAAAATGGATTGGTCAGTCAAAAGGAATTAATATAGATTTTCAACTTAAAGGAATAGAAGCTTCAATTAAG GTATTTTCAACTAAGCCTGAAACTTTGTTTGGAGCTTCTTTTATAGCATTAAGTTATAATCATACTTTAGTGCAGCAATA TGTACATACCACACCAGAAATTCAAGAATTTATTGATAAATGCAGTAATGTTGGCACCTCAAATGTTAATATTGATAAAA TGAGTAAACTTGCTGTACTAACAAATCTTAAGGTAATTCATCCACTAAACAGTAGTATAGAATTGCCAGTAATTCTTAGT AATTTTGTCTTAATGGATTATGGTACTGGAGCATTATTTGGATGTCCAGCACACGATGAGAGGGATCATGAGATTGCAAA ATTATTAAAGTTGAATATTAAGCAGGTCATAACCTCAACTGAAAGAGATATTGATGTGCTTAAAGAAGCATATGTAGGTG ATGGAATAATGATTAACTCATTTCATTTGAATGGATTAACTACTGCTGAAGCTCGGCAAAAAGTTATTAATGAACTGCAG CATAAAAATATAGGACAACAAGTTACGAATTACAAATTAAAAGATTGGGGGATTTCTCGGCAAAGATTTTGGGGATGTCC TATTCCGATTATCCACTGTAAAAGCTGTGGAGCAGTACCAGTACCTTATGAAGACTTGCCAGTAATATTACCAGAACATG GAGTTGAATTTACTGGTAAAGGTAATCCATTAGATAATCATCCTTCCTGGAAATATGTTAAATGTCCTAAATGCCACCTA GATGCAGTTAGAGAAACAGATACATTTGATACTTTTTTTGAATCATCCTGGTATTTCGCCAGATTTTGTAATTCTACGAG TGATGATATGGTCGATGCTAAAGCTGCAAAATATTGGTTGCCAGTAGATCAATATATTGGAGGTATTGAGCATGCAGTAA TGCATTTATTATATGCTAGATTTATAACTAGAGTAATGTATGATCTGAAGTATATAGATATTCAAGAACCTTTTACATCG TTGATAACTCAAGGCATGGTTCTGCATAGAACTTATCAGGACCAAAGTAATAATTGGGTGTATCCAAATGAAGTTGAAGT TGATTCAAATGGAAAATTAAGATGTAAGGCAGATTCACAATATGTGACAGTAGGTAAATTAGAAAAGATGAGCAAGTCTA AAAAGAATGTTGTAGATTTAGAATTGGTACTTAAGCTATATGGCGCTGATGTAGCACGTATGTTTGTTTTATCAGATACA CCTCCTGAAAAAGATTTAGAATGGTCAACTGAAGGTATTGAAGGTTGTTATAAATTTGTTCAAAAGTTATATAACTTTGC ATTGAAGCTTAAGAATATAAATTTAACTGATAATAAAATTGATAAAGTTTTGCTTAACAAAACGCACAAAACTATTAAAA ACGTTACACAAGATATTATAAGTTGCAGGCTAAATAAAGCTATAGCTAGATTAAGAGAATTATATAATCTTATATTTAAA ATGTCTGAATTAACAGTTCAAATAAAAGAGAGTTTTTTAATTTTAATAAGATTGTTTAATCCATTTATTCCACATTTATC AGAGGAAATATGGAGTTTGCTTTCAGACGGAGAGAAAATGCTAGTTGAATTACCATGGCCTAAATATGAAGAAAAATATA TTCATGAAGAAGAGCATATTACTATTGCTATACAAATTAATGGTAAGTTAAGATCATTATATAATTGTCTAATTGATACT CCAGAACATGACGTTCAGTCTGCAATTTTAAAATTAGAACAGGTAAAAAAGCATATTGGCGATAAAGAAGTAAGAAAATG TATTTTTATTCCAAATAAATTAATTAATATAATTGTATGA
Upstream 100 bases:
>100_bases AAAGCTAATCAAGAATTAGCAAGTACAAGTATGGTATTCCAACATATTGCAAAAAACTAAAATTGGCATTTGTTAAGTAA GCTATTTATGGAAAAATTTT
Downstream 100 bases:
>100_bases TAATACAGGATTATTACTAGTGAAGTTTACGTCTTATAATATTGCTGCATTATGGTCTTATATTAAAAAAGGTGATATTA GAGCAATAGCAGTTTATGGT
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS [H]
Number of amino acids: Translated: 839; Mature: 839
Protein sequence:
>839_residues MDLVKIEKKWQEIWEQNEVFKVKEILNKIKRYILPMFPYPSGKAHVGHVRNYTICDVIARFERSQGHNVLHAMGWDAFGL PAENAAMQNNTHPNSWVNSNVDVMKRQLKAIGLSYDWSREIITCSPQYYVHEQRFFLEMLKKGLVYQKESLVNWDPVDQT VLANEQVINGKGWRSGAIIEYRNLKQWFIKITNYADALLKGLDSLQSWPESVKTMQKKWIGQSKGINIDFQLKGIEASIK VFSTKPETLFGASFIALSYNHTLVQQYVHTTPEIQEFIDKCSNVGTSNVNIDKMSKLAVLTNLKVIHPLNSSIELPVILS NFVLMDYGTGALFGCPAHDERDHEIAKLLKLNIKQVITSTERDIDVLKEAYVGDGIMINSFHLNGLTTAEARQKVINELQ HKNIGQQVTNYKLKDWGISRQRFWGCPIPIIHCKSCGAVPVPYEDLPVILPEHGVEFTGKGNPLDNHPSWKYVKCPKCHL DAVRETDTFDTFFESSWYFARFCNSTSDDMVDAKAAKYWLPVDQYIGGIEHAVMHLLYARFITRVMYDLKYIDIQEPFTS LITQGMVLHRTYQDQSNNWVYPNEVEVDSNGKLRCKADSQYVTVGKLEKMSKSKKNVVDLELVLKLYGADVARMFVLSDT PPEKDLEWSTEGIEGCYKFVQKLYNFALKLKNINLTDNKIDKVLLNKTHKTIKNVTQDIISCRLNKAIARLRELYNLIFK MSELTVQIKESFLILIRLFNPFIPHLSEEIWSLLSDGEKMLVELPWPKYEEKYIHEEEHITIAIQINGKLRSLYNCLIDT PEHDVQSAILKLEQVKKHIGDKEVRKCIFIPNKLINIIV
Sequences:
>Translated_839_residues MDLVKIEKKWQEIWEQNEVFKVKEILNKIKRYILPMFPYPSGKAHVGHVRNYTICDVIARFERSQGHNVLHAMGWDAFGL PAENAAMQNNTHPNSWVNSNVDVMKRQLKAIGLSYDWSREIITCSPQYYVHEQRFFLEMLKKGLVYQKESLVNWDPVDQT VLANEQVINGKGWRSGAIIEYRNLKQWFIKITNYADALLKGLDSLQSWPESVKTMQKKWIGQSKGINIDFQLKGIEASIK VFSTKPETLFGASFIALSYNHTLVQQYVHTTPEIQEFIDKCSNVGTSNVNIDKMSKLAVLTNLKVIHPLNSSIELPVILS NFVLMDYGTGALFGCPAHDERDHEIAKLLKLNIKQVITSTERDIDVLKEAYVGDGIMINSFHLNGLTTAEARQKVINELQ HKNIGQQVTNYKLKDWGISRQRFWGCPIPIIHCKSCGAVPVPYEDLPVILPEHGVEFTGKGNPLDNHPSWKYVKCPKCHL DAVRETDTFDTFFESSWYFARFCNSTSDDMVDAKAAKYWLPVDQYIGGIEHAVMHLLYARFITRVMYDLKYIDIQEPFTS LITQGMVLHRTYQDQSNNWVYPNEVEVDSNGKLRCKADSQYVTVGKLEKMSKSKKNVVDLELVLKLYGADVARMFVLSDT PPEKDLEWSTEGIEGCYKFVQKLYNFALKLKNINLTDNKIDKVLLNKTHKTIKNVTQDIISCRLNKAIARLRELYNLIFK MSELTVQIKESFLILIRLFNPFIPHLSEEIWSLLSDGEKMLVELPWPKYEEKYIHEEEHITIAIQINGKLRSLYNCLIDT PEHDVQSAILKLEQVKKHIGDKEVRKCIFIPNKLINIIV >Mature_839_residues MDLVKIEKKWQEIWEQNEVFKVKEILNKIKRYILPMFPYPSGKAHVGHVRNYTICDVIARFERSQGHNVLHAMGWDAFGL PAENAAMQNNTHPNSWVNSNVDVMKRQLKAIGLSYDWSREIITCSPQYYVHEQRFFLEMLKKGLVYQKESLVNWDPVDQT VLANEQVINGKGWRSGAIIEYRNLKQWFIKITNYADALLKGLDSLQSWPESVKTMQKKWIGQSKGINIDFQLKGIEASIK VFSTKPETLFGASFIALSYNHTLVQQYVHTTPEIQEFIDKCSNVGTSNVNIDKMSKLAVLTNLKVIHPLNSSIELPVILS NFVLMDYGTGALFGCPAHDERDHEIAKLLKLNIKQVITSTERDIDVLKEAYVGDGIMINSFHLNGLTTAEARQKVINELQ HKNIGQQVTNYKLKDWGISRQRFWGCPIPIIHCKSCGAVPVPYEDLPVILPEHGVEFTGKGNPLDNHPSWKYVKCPKCHL DAVRETDTFDTFFESSWYFARFCNSTSDDMVDAKAAKYWLPVDQYIGGIEHAVMHLLYARFITRVMYDLKYIDIQEPFTS LITQGMVLHRTYQDQSNNWVYPNEVEVDSNGKLRCKADSQYVTVGKLEKMSKSKKNVVDLELVLKLYGADVARMFVLSDT PPEKDLEWSTEGIEGCYKFVQKLYNFALKLKNINLTDNKIDKVLLNKTHKTIKNVTQDIISCRLNKAIARLRELYNLIFK MSELTVQIKESFLILIRLFNPFIPHLSEEIWSLLSDGEKMLVELPWPKYEEKYIHEEEHITIAIQINGKLRSLYNCLIDT PEHDVQSAILKLEQVKKHIGDKEVRKCIFIPNKLINIIV
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI7661872, Length=877, Percent_Identity=36.4880273660205, Blast_Score=528, Evalue=1e-149, Organism=Homo sapiens, GI46852147, Length=339, Percent_Identity=25.0737463126844, Blast_Score=79, Evalue=1e-14, Organism=Escherichia coli, GI1786861, Length=860, Percent_Identity=43.0232558139535, Blast_Score=719, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=386, Percent_Identity=24.6113989637306, Blast_Score=83, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71997510, Length=248, Percent_Identity=40.7258064516129, Blast_Score=201, Evalue=1e-51, Organism=Caenorhabditis elegans, GI71997517, Length=248, Percent_Identity=40.7258064516129, Blast_Score=201, Evalue=1e-51, Organism=Caenorhabditis elegans, GI212645227, Length=372, Percent_Identity=27.9569892473118, Blast_Score=154, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17510661, Length=922, Percent_Identity=20.6073752711497, Blast_Score=107, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71980946, Length=142, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6323414, Length=875, Percent_Identity=35.5428571428571, Blast_Score=531, Evalue=1e-151, Organism=Saccharomyces cerevisiae, GI6321531, Length=429, Percent_Identity=22.8438228438228, Blast_Score=94, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6325217, Length=144, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21355409, Length=873, Percent_Identity=34.020618556701, Blast_Score=447, Evalue=1e-125, Organism=Drosophila melanogaster, GI281366294, Length=682, Percent_Identity=22.4340175953079, Blast_Score=84, Evalue=6e-16,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 [H]
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1 [H]
EC number: =6.1.1.4 [H]
Molecular weight: Translated: 96733; Mature: 96733
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLVKIEKKWQEIWEQNEVFKVKEILNKIKRYILPMFPYPSGKAHVGHVRNYTICDVIAR CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHH FERSQGHNVLHAMGWDAFGLPAENAAMQNNTHPNSWVNSNVDVMKRQLKAIGLSYDWSRE HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC IITCSPQYYVHEQRFFLEMLKKGLVYQKESLVNWDPVDQTVLANEQVINGKGWRSGAIIE EEEECCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHCCCEEECCCCCCCCCEEE YRNLKQWFIKITNYADALLKGLDSLQSWPESVKTMQKKWIGQSKGINIDFQLKGIEASIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEE VFSTKPETLFGASFIALSYNHTLVQQYVHTTPEIQEFIDKCSNVGTSNVNIDKMSKLAVL EEECCCCHHHCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH TNLKVIHPLNSSIELPVILSNFVLMDYGTGALFGCPAHDERDHEIAKLLKLNIKQVITST HCCEEEECCCCCCCCCCHHHCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCC ERDIDVLKEAYVGDGIMINSFHLNGLTTAEARQKVINELQHKNIGQQVTNYKLKDWGISR HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHCCEECCCCCCH QRFWGCPIPIIHCKSCGAVPVPYEDLPVILPEHGVEFTGKGNPLDNHPSWKYVKCPKCHL HHCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCEEECCCHHH DAVRETDTFDTFFESSWYFARFCNSTSDDMVDAKAAKYWLPVDQYIGGIEHAVMHLLYAR HHHHCCCHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHH FITRVMYDLKYIDIQEPFTSLITQGMVLHRTYQDQSNNWVYPNEVEVDSNGKLRCKADSQ HHHHHHHHHHEEEHHHHHHHHHHCCHHEEEECCCCCCCCCCCCEEEECCCCCEEEECCCC YVTVGKLEKMSKSKKNVVDLELVLKLYGADVARMFVLSDTPPEKDLEWSTEGIEGCYKFV EEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH QKLYNFALKLKNINLTDNKIDKVLLNKTHKTIKNVTQDIISCRLNKAIARLRELYNLIFK HHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MSELTVQIKESFLILIRLFNPFIPHLSEEIWSLLSDGEKMLVELPWPKYEEKYIHEEEHI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCEE TIAIQINGKLRSLYNCLIDTPEHDVQSAILKLEQVKKHIGDKEVRKCIFIPNKLINIIV EEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHCC >Mature Secondary Structure MDLVKIEKKWQEIWEQNEVFKVKEILNKIKRYILPMFPYPSGKAHVGHVRNYTICDVIAR CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHH FERSQGHNVLHAMGWDAFGLPAENAAMQNNTHPNSWVNSNVDVMKRQLKAIGLSYDWSRE HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC IITCSPQYYVHEQRFFLEMLKKGLVYQKESLVNWDPVDQTVLANEQVINGKGWRSGAIIE EEEECCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHCCCEEECCCCCCCCCEEE YRNLKQWFIKITNYADALLKGLDSLQSWPESVKTMQKKWIGQSKGINIDFQLKGIEASIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEE VFSTKPETLFGASFIALSYNHTLVQQYVHTTPEIQEFIDKCSNVGTSNVNIDKMSKLAVL EEECCCCHHHCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH TNLKVIHPLNSSIELPVILSNFVLMDYGTGALFGCPAHDERDHEIAKLLKLNIKQVITST HCCEEEECCCCCCCCCCHHHCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCC ERDIDVLKEAYVGDGIMINSFHLNGLTTAEARQKVINELQHKNIGQQVTNYKLKDWGISR HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHCCEECCCCCCH QRFWGCPIPIIHCKSCGAVPVPYEDLPVILPEHGVEFTGKGNPLDNHPSWKYVKCPKCHL HHCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCCCEEECCCHHH DAVRETDTFDTFFESSWYFARFCNSTSDDMVDAKAAKYWLPVDQYIGGIEHAVMHLLYAR HHHHCCCHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHH FITRVMYDLKYIDIQEPFTSLITQGMVLHRTYQDQSNNWVYPNEVEVDSNGKLRCKADSQ HHHHHHHHHHEEEHHHHHHHHHHCCHHEEEECCCCCCCCCCCCEEEECCCCCEEEECCCC YVTVGKLEKMSKSKKNVVDLELVLKLYGADVARMFVLSDTPPEKDLEWSTEGIEGCYKFV EEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH QKLYNFALKLKNINLTDNKIDKVLLNKTHKTIKNVTQDIISCRLNKAIARLRELYNLIFK HHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MSELTVQIKESFLILIRLFNPFIPHLSEEIWSLLSDGEKMLVELPWPKYEEKYIHEEEHI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCEE TIAIQINGKLRSLYNCLIDTPEHDVQSAILKLEQVKKHIGDKEVRKCIFIPNKLINIIV EEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA