| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189182952
Identifier: 189182952
GI number: 189182952
Start: 52308
End: 52847
Strand: Reverse
Name: 189182952
Synonym: OTT_0045
Alternate gene names: NA
Gene position: 52847-52308 (Counterclockwise)
Preceding gene: 189182953
Following gene: 189182951
Centisome position: 2.63
GC content: 27.78
Gene sequence:
>540_bases ATGGTTATGCGAATCAGTGATACTAGTGATTCTATTCAAATCTTGCCTAACAGCAATAGTTTAGCTGAATTAACAAATTT AGTTTACAGTTATATATTTAACTATGAATGGTATAATAATTTATTATTGCTTGGATGGGATAACAGTACATATCGGAACA TTCATGATAAAGTTATTCAGCTTTGCACTACTGATATAGATCATATAAGTCAAGATGATAGTCTAATATGCTTAGAATAC TTTTGTAGAGACCAAAGCAAACGAAATGTATATACACTAATAAATTTTGATTGTAATATACTAAGATCAATAGTAGATAA GCATTATATATTATCATCTATATGCCAAAGTAATAAAACTAACTTAACTATTGTATATAATAATCAGAATAAAGGGTTAC AGGAACAATTAGATAGCTTAACTCAACAATGTTGCAACAATAGCTGCTATTCTGATAGTAGAATTAATTTTTTAGATATT GATCAGTTTAGAGATTTTGTAGGTGATATATTAGGCCTCTTTCGAAACTGGTTAAGGTAG
Upstream 100 bases:
>100_bases ATATCTTAGTTTTTTAATACCTATACAACAAATACAGCTTGATAATTCAGCTAATGTAATTTATAAATCAGGAATGTAAT ATAATTTTTAAATATATAGG
Downstream 100 bases:
>100_bases TTCAAAATTATTGCCGATAAATATCGAAATATACGTAAAAGATTCGGTCTTAGATTTAATTTGATCTCTGGTATTTATAA TTTTGAACTACCTTAACCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MVMRISDTSDSIQILPNSNSLAELTNLVYSYIFNYEWYNNLLLLGWDNSTYRNIHDKVIQLCTTDIDHISQDDSLICLEY FCRDQSKRNVYTLINFDCNILRSIVDKHYILSSICQSNKTNLTIVYNNQNKGLQEQLDSLTQQCCNNSCYSDSRINFLDI DQFRDFVGDILGLFRNWLR
Sequences:
>Translated_179_residues MVMRISDTSDSIQILPNSNSLAELTNLVYSYIFNYEWYNNLLLLGWDNSTYRNIHDKVIQLCTTDIDHISQDDSLICLEY FCRDQSKRNVYTLINFDCNILRSIVDKHYILSSICQSNKTNLTIVYNNQNKGLQEQLDSLTQQCCNNSCYSDSRINFLDI DQFRDFVGDILGLFRNWLR >Mature_179_residues MVMRISDTSDSIQILPNSNSLAELTNLVYSYIFNYEWYNNLLLLGWDNSTYRNIHDKVIQLCTTDIDHISQDDSLICLEY FCRDQSKRNVYTLINFDCNILRSIVDKHYILSSICQSNKTNLTIVYNNQNKGLQEQLDSLTQQCCNNSCYSDSRINFLDI DQFRDFVGDILGLFRNWLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21043; Mature: 21043
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVMRISDTSDSIQILPNSNSLAELTNLVYSYIFNYEWYNNLLLLGWDNSTYRNIHDKVIQ CEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHCHHHHCCEEEEECCCCHHHHHHHHHHH LCTTDIDHISQDDSLICLEYFCRDQSKRNVYTLINFDCNILRSIVDKHYILSSICQSNKT HHHHHHHHCCCCCCEEHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC NLTIVYNNQNKGLQEQLDSLTQQCCNNSCYSDSRINFLDIDQFRDFVGDILGLFRNWLR EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVMRISDTSDSIQILPNSNSLAELTNLVYSYIFNYEWYNNLLLLGWDNSTYRNIHDKVIQ CEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHCHHHHCCEEEEECCCCHHHHHHHHHHH LCTTDIDHISQDDSLICLEYFCRDQSKRNVYTLINFDCNILRSIVDKHYILSSICQSNKT HHHHHHHHCCCCCCEEHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCC NLTIVYNNQNKGLQEQLDSLTQQCCNNSCYSDSRINFLDIDQFRDFVGDILGLFRNWLR EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA