| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189182920
Identifier: 189182920
GI number: 189182920
Start: 17930
End: 18949
Strand: Direct
Name: 189182920
Synonym: OTT_0013
Alternate gene names: NA
Gene position: 17930-18949 (Clockwise)
Preceding gene: 189182919
Following gene: 189182921
Centisome position: 0.89
GC content: 29.71
Gene sequence:
>1020_bases ATGCAAAAAATTATTAATCTTATTACAATTGGTGCTATTATCTATGTATTAGTTACTGGTAAGTTTATTGACTTTTTACA AACTAACAACAATAGTAATGACGTAGTTGATAGTTCTTCTGCTGCCACAGAAATAAACAGCAAAGAACCAGAGTTTAATG AGCTTGAAGGCAATTTTTTTGAAAAATCTCTTTCTAAGGTTTTAATCAATGTTTTGAAGACAGATACAGGAAAACAACTA TTTAAAAATTTGGTTCATCCAGTTGAACAAAAGTCTAACTTAGCAGTTAGTAGCAATACTAAAATTAATAATATTGCGCT TATTAACTATATCTTTGATATCAAAGACATTACTAAGATACCAGAAGCTAAAGGGCCAGCTTATTGTGGGCAAACAGTAA CTATTTCTTATCGTATCACTGATGAAAACGATGTTATTATTGAAGAAAAAGTGAAGACACTGAAGCTTGGCGATACAAGA AAAGCTGATAGTATTGATAATATAACAGTAGGTATGCGTGTTGGAGAAGTTAGAGAAGCGATAATTCCTCAGCAGTATAT GAATCTTGATACAGTAACCAATCAATCTAATAGTAAAGCATATAAGATTCAAATTACATTACAAGATATTGCATCTTTAA CTAGTATTAAACAAAACGAAATTAGAATTTGGGATGATGAAATAGTACCATATAAAGTACCATATTTATGCGGGCATTTT GCAACTTTTGATGCCAAAATCAGCAAGCTTGATGGAACAGTCATATATGATACTACTAGTGAAGATCAAAAAATAGAAAT GCATTTAGGAGAGAATGATTATCCAATGATTTTTTCATATGCTCTTTTTGATAAAATTCCAGCTGGAAAGAGAACAGTGT TAACAAAAGGAAAATATTTTAGAAATAGTTTAGATAAAGAGCCAATTAAATTATCTTACGATCTACAATCCAAATTACTT ACAGATGAGTTTTTTATTCTTGAGCTTTTTAACTTTCAGGAAGGAAGTAATATTCAATGA
Upstream 100 bases:
>100_bases AATTAAATTTCCAAATATATGTGTTTTACATAAAATTTACTTTTCTTAGATATCAAAACAGCCTTTTAACTGAAAAAGTT CATTAAAAATAATATATATA
Downstream 100 bases:
>100_bases CAGAGTCTAAAAATCGACTAGATAAACAACAAAAGACAATGGTTGTGAGCATATTGGGTATGCCAAACTCTGGTAAGTCA ACCTTACTAAATAGATTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MQKIINLITIGAIIYVLVTGKFIDFLQTNNNSNDVVDSSSAATEINSKEPEFNELEGNFFEKSLSKVLINVLKTDTGKQL FKNLVHPVEQKSNLAVSSNTKINNIALINYIFDIKDITKIPEAKGPAYCGQTVTISYRITDENDVIIEEKVKTLKLGDTR KADSIDNITVGMRVGEVREAIIPQQYMNLDTVTNQSNSKAYKIQITLQDIASLTSIKQNEIRIWDDEIVPYKVPYLCGHF ATFDAKISKLDGTVIYDTTSEDQKIEMHLGENDYPMIFSYALFDKIPAGKRTVLTKGKYFRNSLDKEPIKLSYDLQSKLL TDEFFILELFNFQEGSNIQ
Sequences:
>Translated_339_residues MQKIINLITIGAIIYVLVTGKFIDFLQTNNNSNDVVDSSSAATEINSKEPEFNELEGNFFEKSLSKVLINVLKTDTGKQL FKNLVHPVEQKSNLAVSSNTKINNIALINYIFDIKDITKIPEAKGPAYCGQTVTISYRITDENDVIIEEKVKTLKLGDTR KADSIDNITVGMRVGEVREAIIPQQYMNLDTVTNQSNSKAYKIQITLQDIASLTSIKQNEIRIWDDEIVPYKVPYLCGHF ATFDAKISKLDGTVIYDTTSEDQKIEMHLGENDYPMIFSYALFDKIPAGKRTVLTKGKYFRNSLDKEPIKLSYDLQSKLL TDEFFILELFNFQEGSNIQ >Mature_339_residues MQKIINLITIGAIIYVLVTGKFIDFLQTNNNSNDVVDSSSAATEINSKEPEFNELEGNFFEKSLSKVLINVLKTDTGKQL FKNLVHPVEQKSNLAVSSNTKINNIALINYIFDIKDITKIPEAKGPAYCGQTVTISYRITDENDVIIEEKVKTLKLGDTR KADSIDNITVGMRVGEVREAIIPQQYMNLDTVTNQSNSKAYKIQITLQDIASLTSIKQNEIRIWDDEIVPYKVPYLCGHF ATFDAKISKLDGTVIYDTTSEDQKIEMHLGENDYPMIFSYALFDKIPAGKRTVLTKGKYFRNSLDKEPIKLSYDLQSKLL TDEFFILELFNFQEGSNIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase FKBP-type domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001179 [H]
Pfam domain/function: PF00254 FKBP_C [H]
EC number: NA
Molecular weight: Translated: 38386; Mature: 38386
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00123 ALKALINE_PHOSPHATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKIINLITIGAIIYVLVTGKFIDFLQTNNNSNDVVDSSSAATEINSKEPEFNELEGNFF CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHH EKSLSKVLINVLKTDTGKQLFKNLVHPVEQKSNLAVSSNTKINNIALINYIFDIKDITKI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEECCHHHHHHC PEAKGPAYCGQTVTISYRITDENDVIIEEKVKTLKLGDTRKADSIDNITVGMRVGEVREA CCCCCCCCCCCEEEEEEEEECCCCEEEECCHHEEECCCCCCCCCCCCEEEEEEHHHHHHH IIPQQYMNLDTVTNQSNSKAYKIQITLQDIASLTSIKQNEIRIWDDEIVPYKVPYLCGHF HCCHHHCCCHHCCCCCCCEEEEEEEEHHHHHHHHHCCCCCEEEECCCCCCEECHHHHCCH ATFDAKISKLDGTVIYDTTSEDQKIEMHLGENDYPMIFSYALFDKIPAGKRTVLTKGKYF HHHCCCCEECCCEEEEECCCCCCEEEEEECCCCCCEEEEEHHHHCCCCCCEEEEECCHHH RNSLDKEPIKLSYDLQSKLLTDEFFILELFNFQEGSNIQ HHCCCCCCEEEEECHHHHHHCCCEEEEEEECCCCCCCCC >Mature Secondary Structure MQKIINLITIGAIIYVLVTGKFIDFLQTNNNSNDVVDSSSAATEINSKEPEFNELEGNFF CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHH EKSLSKVLINVLKTDTGKQLFKNLVHPVEQKSNLAVSSNTKINNIALINYIFDIKDITKI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEECCHHHHHHC PEAKGPAYCGQTVTISYRITDENDVIIEEKVKTLKLGDTRKADSIDNITVGMRVGEVREA CCCCCCCCCCCEEEEEEEEECCCCEEEECCHHEEECCCCCCCCCCCCEEEEEEHHHHHHH IIPQQYMNLDTVTNQSNSKAYKIQITLQDIASLTSIKQNEIRIWDDEIVPYKVPYLCGHF HCCHHHCCCHHCCCCCCCEEEEEEEEHHHHHHHHHCCCCCEEEECCCCCCEECHHHHCCH ATFDAKISKLDGTVIYDTTSEDQKIEMHLGENDYPMIFSYALFDKIPAGKRTVLTKGKYF HHHCCCCEECCCEEEEECCCCCCEEEEEECCCCCCEEEEEHHHHCCCCCCEEEEECCHHH RNSLDKEPIKLSYDLQSKLLTDEFFILELFNFQEGSNIQ HHCCCCCCEEEEECHHHHHHCCCEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA