| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
Click here to switch to the map view.
The map label for this gene is 189026152
Identifier: 189026152
GI number: 189026152
Start: 1010802
End: 1011572
Strand: Direct
Name: 189026152
Synonym: TPASS_0929
Alternate gene names: NA
Gene position: 1010802-1011572 (Clockwise)
Preceding gene: 189026151
Following gene: 189026153
Centisome position: 88.71
GC content: 55.25
Gene sequence:
>771_bases TTGTCTTTTGAAGACGCTGTCGCTACTGGCTCCACCAAAGTTGGTACCGATGCTACCGGAAAAATGACCCACTCCTATCG GAGTGATGTGAACGAATTCTTTCCCGACGCGCAGGACTTGGACACGGTGCTCCGCACGGCGGTGGGAGCCTTGAGTCCTG TAGTGAAGATAGAGCGCGGTTTTGCCATCGTGCGCACCGACGCTGAACCTAGCGCTCCGGACTTTAGTGACGCAGCAACG CGGGAGCGCGTGTTCGCACACATGGCTCGTGTGGAGCGGGGCACCATCGAACGTTTCCTTGAGGAGGAAGCACATACCTT TTCCACCCGGGCGAAACAGGGTGGATTCACCGCCGCCGCACAGAGCCTTAACTTAGACGTGCATACGAGTCGTTCCTTTC CCATTAATTTCGGAAATGTCGACGTGCTCCCTGCCCTTCCGCGCCAGTCCGACCCCCCGTTAGCGCGGATTGCATATGAC GAGAAATTTTTTTCCACCGCGTTCGCCCTTCTCCCCGGGCAGGTGTCTGACCCACTTATTCTTGATAGTTCCGTAGTACT GCTCCAGTTACACGAGGAAAAGTCAGTGGACGAATCAGTGCTCGCTACTACCGGAGACAGCTATGCACACCATGTGCGCA CTTGGTACCCGGGCTACCCGCTTGCGCTGCTAAACACGGCAAAGATGCCATGGGCACAGGAATCGGTCGTAGATACTATC CTGGCTCATCCCTCATTTAAGGATACATTTGACAATATCTTTCGGCGCTAG
Upstream 100 bases:
>100_bases AGAGCATGCCCACCTTTTTACCCTGCATCACCTTTCCTTGCTCACCTACTCCTCGGAAGAGGACGCGCGCCGCACGGCAC GCGCTCTAGAGAAACGGGAA
Downstream 100 bases:
>100_bases CCCTGTGCGTGGCGCGGCTGTGAGTGCGTTTCCCTTCTATGGGTACATCTGACGTCGCTGGCGTGCGTGGCGACGTTCCC TCGCTCCCGCCGCGTCTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MSFEDAVATGSTKVGTDATGKMTHSYRSDVNEFFPDAQDLDTVLRTAVGALSPVVKIERGFAIVRTDAEPSAPDFSDAAT RERVFAHMARVERGTIERFLEEEAHTFSTRAKQGGFTAAAQSLNLDVHTSRSFPINFGNVDVLPALPRQSDPPLARIAYD EKFFSTAFALLPGQVSDPLILDSSVVLLQLHEEKSVDESVLATTGDSYAHHVRTWYPGYPLALLNTAKMPWAQESVVDTI LAHPSFKDTFDNIFRR
Sequences:
>Translated_256_residues MSFEDAVATGSTKVGTDATGKMTHSYRSDVNEFFPDAQDLDTVLRTAVGALSPVVKIERGFAIVRTDAEPSAPDFSDAAT RERVFAHMARVERGTIERFLEEEAHTFSTRAKQGGFTAAAQSLNLDVHTSRSFPINFGNVDVLPALPRQSDPPLARIAYD EKFFSTAFALLPGQVSDPLILDSSVVLLQLHEEKSVDESVLATTGDSYAHHVRTWYPGYPLALLNTAKMPWAQESVVDTI LAHPSFKDTFDNIFRR >Mature_255_residues SFEDAVATGSTKVGTDATGKMTHSYRSDVNEFFPDAQDLDTVLRTAVGALSPVVKIERGFAIVRTDAEPSAPDFSDAATR ERVFAHMARVERGTIERFLEEEAHTFSTRAKQGGFTAAAQSLNLDVHTSRSFPINFGNVDVLPALPRQSDPPLARIAYDE KFFSTAFALLPGQVSDPLILDSSVVLLQLHEEKSVDESVLATTGDSYAHHVRTWYPGYPLALLNTAKMPWAQESVVDTIL AHPSFKDTFDNIFRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y929_TREPA (O83899)
Other databases:
- EMBL: AE000520 - PIR: B71264 - RefSeq: NP_219365.1 - ProteinModelPortal: O83899 - IntAct: O83899 - GeneID: 2611549 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0929 - NMPDR: fig|243276.1.peg.923 - TIGR: TP_0929 - HOGENOM: HBG732167 - ProtClustDB: CLSK218929 - BioCyc: TPAL243276:TP_0929-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28193; Mature: 28062
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFEDAVATGSTKVGTDATGKMTHSYRSDVNEFFPDAQDLDTVLRTAVGALSPVVKIERG CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC FAIVRTDAEPSAPDFSDAATRERVFAHMARVERGTIERFLEEEAHTFSTRAKQGGFTAAA EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QSLNLDVHTSRSFPINFGNVDVLPALPRQSDPPLARIAYDEKFFSTAFALLPGQVSDPLI HHCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCEE LDSSVVLLQLHEEKSVDESVLATTGDSYAHHVRTWYPGYPLALLNTAKMPWAQESVVDTI ECCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHEECCCCCCHHHCCCCCCCHHHHHHHHH LAHPSFKDTFDNIFRR HCCCCHHHHHHHHHCC >Mature Secondary Structure SFEDAVATGSTKVGTDATGKMTHSYRSDVNEFFPDAQDLDTVLRTAVGALSPVVKIERG CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC FAIVRTDAEPSAPDFSDAATRERVFAHMARVERGTIERFLEEEAHTFSTRAKQGGFTAAA EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QSLNLDVHTSRSFPINFGNVDVLPALPRQSDPPLARIAYDEKFFSTAFALLPGQVSDPLI HHCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCEE LDSSVVLLQLHEEKSVDESVLATTGDSYAHHVRTWYPGYPLALLNTAKMPWAQESVVDTI ECCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHEECCCCCCHHHCCCCCCCHHHHHHHHH LAHPSFKDTFDNIFRR HCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9665876