| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189026135
Identifier: 189026135
GI number: 189026135
Start: 991634
End: 992956
Strand: Direct
Name: 189026135
Synonym: TPASS_0912
Alternate gene names: NA
Gene position: 991634-992956 (Clockwise)
Preceding gene: 189026134
Following gene: 189026136
Centisome position: 87.03
GC content: 47.69
Gene sequence:
>1323_bases GTGTGCATAAGACGTGGTATTAACCCGTGCGCACCGATGCCGAAGATAAGGCGGGTAAAGAGGTACAGGTCCATGTCACA AAAAATCGATGTATCTGAACTGCAAGAAGGAATGTGTTTTTCCGAGCCCGTGTTCTTCGACGACGGAGAAAACCTCCTCC TCAGGGAAGGGGAGCCGGTAAGCACTCGAGAGCTGACGGTGCTCCAGGATTGGAATATTCCCTACGTTGTGACCGCAGGT AGGGTGCTGGCTGAAGGGGAGTCAGTTCCCTCTTCTACCGTGGAGGAATTAGCAGAATTTGAAGAGCTTGCAGCAGAAGA ACTGCTTGATCCTGAAGACGATATCGTTTCCACCGGAGAACTCCGTACTCAAGATATCCTGAAGGATATTTGTGAACTCC TTCCTAAGGTGTGTATCAATCCCCACTATCATGAAGAATACGTTGGCTTTATTCAGGAATTGAACATGCTTTTTGCCAAG ATGAATGCGCACACGACACTTCCTGCGCGCCCTGCGGACATGCTTGCAAAGCGCCTTTCAGAATTAGTTCGAGCAAATAC ACTCGGGTTTGTCAGTTTAGTGCTGTCATACAAAATCGAAGGATTTCGATTTGCAAAACCTGCAGTAGATACGGCTATCT TTTCCATTATCGTTGCGCAGCATTTGGGTTTTTCTGAAAAAGATATATTTGATTTGGTCGTTGCCTCACTCCTGCACGAT ATCGGTATGCAGCATGTTCCTGCCGACATCTTGAAGAAGTCGGGGAGATTGCATTTTCAAGAACAGCAGGCAGTTGACGC GCACACCATTTACGCACATTCCTACATCGTAAACACGCTCAAATACCCGAACTCGGTTGGACTGAGTGTACTCCAGCACC ATGAACACTGGAATGGAAAAGGGTATCCCCAGTCTCTTTCTGGAAACAAAATTACCATCGGTGCGAGGATTCTTGCAGTT ACTGATGCCTTTGCTGCAATGCTTGCGCCAAAGTCGTATCGCAAACCGTTCAGTGGCTATCAAGCAATGAAAAGCTTACT TGCTGACAACGCACGTCGCTTTGATCCAGACGTAATCAAGGCAATGATTCAAAGCGTCGGTATTTACCCCATTGGGTCGT TGGTGCTCCTGAATAACTCAGCAGTTGCGCGCGTGGTAAAGACCACGGCCACGGCGCCGTTGCGTCCGTGTTTAAGAATA GTTATCGACGAGCACGACGTAACCCATCCTGACGACAGCGGTGAGTTCATTGATTTAGCGGTCAATAAAACGAATTACAT TGTAGGAGAAGTGAGTCCGTGGAGTTATGCCAAAGCACAATAA
Upstream 100 bases:
>100_bases GTCTGAGCACAGGATAGGTGCGTGTATCCCACCGGAAACCTATCAGGTTGTCTCTGCAATCTTTGCCTTTTTGTACACAC AACAGTAACGTTACCGCTGT
Downstream 100 bases:
>100_bases GTTACTCGGTGCATTTGGAGAGGCGTATGCGGCGCGCTGGCTAGCGACGCGCGGATATATTATCATCACACGAAACTGGC GCAGAGCAACAGGTGAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MCIRRGINPCAPMPKIRRVKRYRSMSQKIDVSELQEGMCFSEPVFFDDGENLLLREGEPVSTRELTVLQDWNIPYVVTAG RVLAEGESVPSSTVEELAEFEELAAEELLDPEDDIVSTGELRTQDILKDICELLPKVCINPHYHEEYVGFIQELNMLFAK MNAHTTLPARPADMLAKRLSELVRANTLGFVSLVLSYKIEGFRFAKPAVDTAIFSIIVAQHLGFSEKDIFDLVVASLLHD IGMQHVPADILKKSGRLHFQEQQAVDAHTIYAHSYIVNTLKYPNSVGLSVLQHHEHWNGKGYPQSLSGNKITIGARILAV TDAFAAMLAPKSYRKPFSGYQAMKSLLADNARRFDPDVIKAMIQSVGIYPIGSLVLLNNSAVARVVKTTATAPLRPCLRI VIDEHDVTHPDDSGEFIDLAVNKTNYIVGEVSPWSYAKAQ
Sequences:
>Translated_440_residues MCIRRGINPCAPMPKIRRVKRYRSMSQKIDVSELQEGMCFSEPVFFDDGENLLLREGEPVSTRELTVLQDWNIPYVVTAG RVLAEGESVPSSTVEELAEFEELAAEELLDPEDDIVSTGELRTQDILKDICELLPKVCINPHYHEEYVGFIQELNMLFAK MNAHTTLPARPADMLAKRLSELVRANTLGFVSLVLSYKIEGFRFAKPAVDTAIFSIIVAQHLGFSEKDIFDLVVASLLHD IGMQHVPADILKKSGRLHFQEQQAVDAHTIYAHSYIVNTLKYPNSVGLSVLQHHEHWNGKGYPQSLSGNKITIGARILAV TDAFAAMLAPKSYRKPFSGYQAMKSLLADNARRFDPDVIKAMIQSVGIYPIGSLVLLNNSAVARVVKTTATAPLRPCLRI VIDEHDVTHPDDSGEFIDLAVNKTNYIVGEVSPWSYAKAQ >Mature_440_residues MCIRRGINPCAPMPKIRRVKRYRSMSQKIDVSELQEGMCFSEPVFFDDGENLLLREGEPVSTRELTVLQDWNIPYVVTAG RVLAEGESVPSSTVEELAEFEELAAEELLDPEDDIVSTGELRTQDILKDICELLPKVCINPHYHEEYVGFIQELNMLFAK MNAHTTLPARPADMLAKRLSELVRANTLGFVSLVLSYKIEGFRFAKPAVDTAIFSIIVAQHLGFSEKDIFDLVVASLLHD IGMQHVPADILKKSGRLHFQEQQAVDAHTIYAHSYIVNTLKYPNSVGLSVLQHHEHWNGKGYPQSLSGNKITIGARILAV TDAFAAMLAPKSYRKPFSGYQAMKSLLADNARRFDPDVIKAMIQSVGIYPIGSLVLLNNSAVARVVKTTATAPLRPCLRI VIDEHDVTHPDDSGEFIDLAVNKTNYIVGEVSPWSYAKAQ
Specific function: Unknown
COG id: COG2206
COG function: function code T; HD-GYP domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003607 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49019; Mature: 49019
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCIRRGINPCAPMPKIRRVKRYRSMSQKIDVSELQEGMCFSEPVFFDDGENLLLREGEPV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCEEEECCCCC STRELTVLQDWNIPYVVTAGRVLAEGESVPSSTVEELAEFEELAAEELLDPEDDIVSTGE CCCEEEEEECCCCCEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC LRTQDILKDICELLPKVCINPHYHEEYVGFIQELNMLFAKMNAHTTLPARPADMLAKRLS CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH ELVRANTLGFVSLVLSYKIEGFRFAKPAVDTAIFSIIVAQHLGFSEKDIFDLVVASLLHD HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH IGMQHVPADILKKSGRLHFQEQQAVDAHTIYAHSYIVNTLKYPNSVGLSVLQHHEHWNGK CCCCCCCHHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC GYPQSLSGNKITIGARILAVTDAFAAMLAPKSYRKPFSGYQAMKSLLADNARRFDPDVIK CCCCCCCCCEEEECHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH AMIQSVGIYPIGSLVLLNNSAVARVVKTTATAPLRPCLRIVIDEHDVTHPDDSGEFIDLA HHHHHCCCCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEE VNKTNYIVGEVSPWSYAKAQ ECCCEEEEECCCCCCCCCCC >Mature Secondary Structure MCIRRGINPCAPMPKIRRVKRYRSMSQKIDVSELQEGMCFSEPVFFDDGENLLLREGEPV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCEEEECCCCC STRELTVLQDWNIPYVVTAGRVLAEGESVPSSTVEELAEFEELAAEELLDPEDDIVSTGE CCCEEEEEECCCCCEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC LRTQDILKDICELLPKVCINPHYHEEYVGFIQELNMLFAKMNAHTTLPARPADMLAKRLS CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH ELVRANTLGFVSLVLSYKIEGFRFAKPAVDTAIFSIIVAQHLGFSEKDIFDLVVASLLHD HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH IGMQHVPADILKKSGRLHFQEQQAVDAHTIYAHSYIVNTLKYPNSVGLSVLQHHEHWNGK CCCCCCCHHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC GYPQSLSGNKITIGARILAVTDAFAAMLAPKSYRKPFSGYQAMKSLLADNARRFDPDVIK CCCCCCCCCEEEECHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH AMIQSVGIYPIGSLVLLNNSAVARVVKTTATAPLRPCLRIVIDEHDVTHPDDSGEFIDLA HHHHHCCCCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEE VNKTNYIVGEVSPWSYAKAQ ECCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9403685 [H]