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The map label for this gene is rimM

Identifier: 189026130

GI number: 189026130

Start: 988815

End: 989339

Strand: Direct

Name: rimM

Synonym: TPASS_0907

Alternate gene names: 189026130

Gene position: 988815-989339 (Clockwise)

Preceding gene: 189026129

Following gene: 189026131

Centisome position: 86.78

GC content: 57.14

Gene sequence:

>525_bases
GTGACTGCACGCATCGTGAGCACCTTTGGGGTTGCGGGTTTACTCAGGCTCAAGAGCTTCTCGGGTGAGTATGCACATCT
TGCCACACTAAAGCAGGTTTGTCTTGCTCCTCCACGGAGCAGATCCTCAGGCACCCTCGCTTGTGCTCTCCCGCGTGAGG
CCGTCCACATGGTAGAGCACGTTCTCCTACGTGCGCAGGACGCGCTGCTCAAGCTCCACCGCGTAGATACGGTAGAGTGC
GCTCGGACGTTTGTAGGAGCAGAGCTGCGGGTACCGCGTGCCGAGGCTTGTCCGCTTAGCGCTGGGGAGTTTTACCTGGC
CGATCTGTGTCGTTGTGAACTCGTTTTCGAGGGCTCGGCGGTGGGTGTTGTCTTGAGCGTTGTCGAAGGGGGCGGTAGCT
CCCTTTTAGAGGTTCAAAGGACACATGGTGGCGTTTGCTATGTGCCTTTTCACCGGACCTTCATTGGGGACGTGGACGTT
GGTCGAAAAAAAATCGAGTTGTTGCAGCGGTGGATTCTCGAATGA

Upstream 100 bases:

>100_bases
CTTCTCAGACGCGTTACGCTTTAGAGATCATCGACTAGCGGCTCCTTTTCCGTCTTGCGGCCTTGTTGCAGGCGGTGTGT
GGTGGGTTATGGATAGAATT

Downstream 100 bases:

>100_bases
ACATTGACGTACTGACTCTCTTTCCCGCCATCCCGCGGGTTTATTTCTCCACCTCAATAATGGCGCGCGCCGTGAGCGAC
GGGATCATTCACTACAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MTARIVSTFGVAGLLRLKSFSGEYAHLATLKQVCLAPPRSRSSGTLACALPREAVHMVEHVLLRAQDALLKLHRVDTVEC
ARTFVGAELRVPRAEACPLSAGEFYLADLCRCELVFEGSAVGVVLSVVEGGGSSLLEVQRTHGGVCYVPFHRTFIGDVDV
GRKKIELLQRWILE

Sequences:

>Translated_174_residues
MTARIVSTFGVAGLLRLKSFSGEYAHLATLKQVCLAPPRSRSSGTLACALPREAVHMVEHVLLRAQDALLKLHRVDTVEC
ARTFVGAELRVPRAEACPLSAGEFYLADLCRCELVFEGSAVGVVLSVVEGGGSSLLEVQRTHGGVCYVPFHRTFIGDVDV
GRKKIELLQRWILE
>Mature_173_residues
TARIVSTFGVAGLLRLKSFSGEYAHLATLKQVCLAPPRSRSSGTLACALPREAVHMVEHVLLRAQDALLKLHRVDTVECA
RTFVGAELRVPRAEACPLSAGEFYLADLCRCELVFEGSAVGVVLSVVEGGGSSLLEVQRTHGGVCYVPFHRTFIGDVDVG
RKKIELLQRWILE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_TREPA (O83877)

Other databases:

- EMBL:   AE000520
- PIR:   H71267
- RefSeq:   NP_219342.1
- ProteinModelPortal:   O83877
- IntAct:   O83877
- GeneID:   2611236
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0907
- NMPDR:   fig|243276.1.peg.901
- TIGR:   TP_0907
- HOGENOM:   HBG732157
- OMA:   IGFELWV
- ProtClustDB:   CLSK218920
- BioCyc:   TPAL243276:TP_0907-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18945; Mature: 18814

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARIVSTFGVAGLLRLKSFSGEYAHLATLKQVCLAPPRSRSSGTLACALPREAVHMVEH
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHH
VLLRAQDALLKLHRVDTVECARTFVGAELRVPRAEACPLSAGEFYLADLCRCELVFEGSA
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCH
VGVVLSVVEGGGSSLLEVQRTHGGVCYVPFHRTFIGDVDVGRKKIELLQRWILE
HEEEEEECCCCCCHHEEECCCCCCEEEECCHHEEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TARIVSTFGVAGLLRLKSFSGEYAHLATLKQVCLAPPRSRSSGTLACALPREAVHMVEH
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHH
VLLRAQDALLKLHRVDTVECARTFVGAELRVPRAEACPLSAGEFYLADLCRCELVFEGSA
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCH
VGVVLSVVEGGGSSLLEVQRTHGGVCYVPFHRTFIGDVDVGRKKIELLQRWILE
HEEEEEECCCCCCHHEEECCCCCCEEEECCHHEEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876