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The map label for this gene is whiG [H]

Identifier: 189025934

GI number: 189025934

Start: 777336

End: 778124

Strand: Direct

Name: whiG [H]

Synonym: TPASS_0709

Alternate gene names: 189025934

Gene position: 777336-778124 (Clockwise)

Preceding gene: 189025933

Following gene: 189025935

Centisome position: 68.22

GC content: 50.89

Gene sequence:

>789_bases
ATGGGGAACACAGCCTTCGAACAGCAGTCGGAAGAGGAGCTTTGGCTCGAGTATCGGAGGACGCGTAGCGCGAAAATACG
CGAGTACTTTGTTGTGCAGTACGCTCCTCTGGTCAAATACGTTGCAAGCAAAATTGCCGTTGGGAAACCGGGGAACGTTG
AGTTCGATGACCTCGTAAGCTACGGTATCTTTGGTCTTTTTGACGCTATCGATAAATATGACCCAGAAAAAAACATTCGA
TTTAATACGTACGCGGTTACGCGCATCCGCGGTGCTATCTTTGATGAACTGCGCTCCATCGACTGGGTTCCCCGGTCGGT
GCGTCAGCAAACACGCCAGATAGAAGAAGCGATTGCAGATCTAGAGGCACGCCTTGGGCGTGMTGCCACAGATACTGAGA
TCGCGTGCGCGCTGAATATTGAGCTTGAAGAGTACCACCAGCTCCTCTTGAAGGTGTCCGGCACGAGCGTGATTTCCCTT
GCCGATTCGAAGTTTGGTGGAGATGAGCGAGACCACGTCTCTGTGGGAGACAGCATCGAAGCGCCCGCTTCTCTCAATCC
CGACGTCATTGTCGAACGCGAGGAAATCAAGCGTATCATCGCAGAGGCAATTAGGGAACTTTCTCAACGCGAGCAGCAGG
TGCTCATACTATACTACTACGAAGAAATGACCTTAAAGGAGATTGGCAAGGTGCTCAAAGTGACCGAGTCGCGTATCTCT
CAGATCCACACCAGCGCGAATTTAAAGTTAAAGGCAAAGCTCACCAACATCAAAAAGGGTATCCGGTAA

Upstream 100 bases:

>100_bases
CGCATGGCACGCGCCATCCGAACCGTGCTCTCCCAAGACACCTAGCGAGCCGGCTTGTATTTTCATTCTGAAATCAGCTA
TAACAGTAGAGGGCACGGGA

Downstream 100 bases:

>100_bases
TACTCCCTATGAATACTCGCTTTGATCAAATTCGCCGCGATATGCAGAAACGCTACGAGGAGGATTCTAAGCGTGTCTGC
GTCAGTGCGTGCGCAAAAAC

Product: RNA polymerase sigma factor WhiG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MGNTAFEQQSEEELWLEYRRTRSAKIREYFVVQYAPLVKYVASKIAVGKPGNVEFDDLVSYGIFGLFDAIDKYDPEKNIR
FNTYAVTRIRGAIFDELRSIDWVPRSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIELEEYHQLLLKVSGTSVISL
ADSKFGGDERDHVSVGDSIEAPASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILYYYEEMTLKEIGKVLKVTESRIS
QIHTSANLKLKAKLTNIKKGIR

Sequences:

>Translated_262_residues
MGNTAFEQQSEEELWLEYRRTRSAKIREYFVVQYAPLVKYVASKIAVGKPGNVEFDDLVSYGIFGLFDAIDKYDPEKNIR
FNTYAVTRIRGAIFDELRSIDWVPRSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIELEEYHQLLLKVSGTSVISL
ADSKFGGDERDHVSVGDSIEAPASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILYYYEEMTLKEIGKVLKVTESRIS
QIHTSANLKLKAKLTNIKKGIR
>Mature_261_residues
GNTAFEQQSEEELWLEYRRTRSAKIREYFVVQYAPLVKYVASKIAVGKPGNVEFDDLVSYGIFGLFDAIDKYDPEKNIRF
NTYAVTRIRGAIFDELRSIDWVPRSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIELEEYHQLLLKVSGTSVISLA
DSKFGGDERDHVSVGDSIEAPASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILYYYEEMTLKEIGKVLKVTESRISQ
IHTSANLKLKAKLTNIKKGIR

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=229, Percent_Identity=43.6681222707424, Blast_Score=181, Evalue=3e-47,
Organism=Escherichia coli, GI1789098, Length=204, Percent_Identity=27.4509803921569, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789448, Length=210, Percent_Identity=31.4285714285714, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 29874; Mature: 29743

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00715 SIGMA70_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNTAFEQQSEEELWLEYRRTRSAKIREYFVVQYAPLVKYVASKIAVGKPGNVEFDDLVS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
YGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIFDELRSIDWVPRSVRQQTRQIEEAIAD
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LEARLGRXATDTEIACALNIELEEYHQLLLKVSGTSVISLADSKFGGDERDHVSVGDSIE
HHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
APASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILYYYEEMTLKEIGKVLKVTESRIS
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHH
QIHTSANLKLKAKLTNIKKGIR
HHHHCCCEEEEEEHHHHHCCCC
>Mature Secondary Structure 
GNTAFEQQSEEELWLEYRRTRSAKIREYFVVQYAPLVKYVASKIAVGKPGNVEFDDLVS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
YGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIFDELRSIDWVPRSVRQQTRQIEEAIAD
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LEARLGRXATDTEIACALNIELEEYHQLLLKVSGTSVISLADSKFGGDERDHVSVGDSIE
HHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
APASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILYYYEEMTLKEIGKVLKVTESRIS
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHHHHHHH
QIHTSANLKLKAKLTNIKKGIR
HHHHCCCEEEEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]