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The map label for this gene is rpoZ

Identifier: 189025926

GI number: 189025926

Start: 768414

End: 768617

Strand: Reverse

Name: rpoZ

Synonym: TPASS_0701

Alternate gene names: 189025926

Gene position: 768617-768414 (Counterclockwise)

Preceding gene: 189025927

Following gene: 189025925

Centisome position: 67.45

GC content: 51.47

Gene sequence:

>204_bases
ATGATTTTCCCAATGCAGCAGTTGATTGAGTTTCAGGGCAATATTTATGAGATTACGTGTGCAGCAACGCGTCGAGCTTT
TCAACTCGCAGCGGTTTGCGACCCTGTTTTGGATGAACTTGGGGGAAAGGTGGTGTCCGCTGCAGCGCAGCAGGTGTTTT
CAGGAACGGTGGACTACCGGATAGAGCCGCAGGAGTTAGGGTAG

Upstream 100 bases:

>100_bases
AACCTACTGCGCCATTGCCCGCGGTGCGCATTCTACACAGGGGGGATCGTGTACGTCAAGCAGTGCTTGTTGCGCGGCGC
GATAGGTGTTACGATGACCC

Downstream 100 bases:

>100_bases
CGCGGTTTGGACATTAACAGTCCGCTCCTGCGGGGGCAGATTAGGAGTTTGTTTTCTAGAAGTTGTTTTTCAATAAAGGG
CCGGTTCTAAGTCACGCTCT

Product: DNA-directed RNA polymerase

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MIFPMQQLIEFQGNIYEITCAATRRAFQLAAVCDPVLDELGGKVVSAAAQQVFSGTVDYRIEPQELG

Sequences:

>Translated_67_residues
MIFPMQQLIEFQGNIYEITCAATRRAFQLAAVCDPVLDELGGKVVSAAAQQVFSGTVDYRIEPQELG
>Mature_67_residues
MIFPMQQLIEFQGNIYEITCAATRRAFQLAAVCDPVLDELGGKVVSAAAQQVFSGTVDYRIEPQELG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_TREPA (O83699)

Other databases:

- EMBL:   AE000520
- PIR:   A71289
- RefSeq:   NP_219138.1
- ProteinModelPortal:   O83699
- IntAct:   O83699
- GeneID:   2611622
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0701
- NMPDR:   fig|243276.1.peg.697
- TIGR:   TP_0701
- HOGENOM:   HBG251043
- OMA:   EITCAST
- ProtClustDB:   PRK00392
- BioCyc:   TPAL243276:TP_0701-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR006110

Pfam domain/function: PF01192 RNA_pol_Rpb6

EC number: =2.7.7.6

Molecular weight: Translated: 7350; Mature: 7350

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFPMQQLIEFQGNIYEITCAATRRAFQLAAVCDPVLDELGGKVVSAAAQQVFSGTVDYR
CCCCHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEE
IEPQELG
ECHHCCC
>Mature Secondary Structure
MIFPMQQLIEFQGNIYEITCAATRRAFQLAAVCDPVLDELGGKVVSAAAQQVFSGTVDYR
CCCCHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEE
IEPQELG
ECHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876