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The map label for this gene is nifU [H]

Identifier: 189025841

GI number: 189025841

Start: 669659

End: 670102

Strand: Direct

Name: nifU [H]

Synonym: TPASS_0615

Alternate gene names: 189025841

Gene position: 669659-670102 (Clockwise)

Preceding gene: 189025840

Following gene: 189025842

Centisome position: 58.77

GC content: 54.05

Gene sequence:

>444_bases
ATGAACGCAGAAGCGATATACCGACAGGTGCTGCTCGAGTACGCACGCAAGCAGGAACACCGCAGGGTGTTAGAAGGGCC
GGTAGGCATCGAGCGGGGTCATAATCCCAGTTGTGGCGATGACCTCACGCTCTTGATAAAGAGAGAAGGTGATCGCATCG
CTGATGTAGCCTTTTTAGGTACCGGTTGTGCGGTGTCCACCGCTTCTACAAATATACTCATCGAACTGATCAAGGGTGCG
TCAGTGGCGCAGGCGCAAAAAACGGTTGCGCTGTTCTTTCACATGATGGCACAGCAGTGCCTCACAGACCAGGAGCGGGC
ACACCTACAGGACGCGTGCATCCTCGCCTGTTTTGCATCCATGCCTGCGCGCATTAAGTGCGCAACCCTCAGCTGGCACA
ATGCAGATATTCTTTTGCACCACAAAAAGGATACAGACGCGTGA

Upstream 100 bases:

>100_bases
CGCTGACGCGTGCGTTGCACGCCGTGGGCAGGATTTTTCAATGCAGCTAGGCCAGTGCGCCTTCCTGGCATTCGCTGCCT
TTCTCTAAGGAGATCTCCCT

Downstream 100 bases:

>100_bases
GTGCACTTGTGGAAAAAGCTATGCACGAGAGGAACACGACGACGAACACCCCATTAGACGTTACCGCGCAGAAATTGCTG
GTTGCCCAGCGCAGCGTGGA

Product: nitrogen fixation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MNAEAIYRQVLLEYARKQEHRRVLEGPVGIERGHNPSCGDDLTLLIKREGDRIADVAFLGTGCAVSTASTNILIELIKGA
SVAQAQKTVALFFHMMAQQCLTDQERAHLQDACILACFASMPARIKCATLSWHNADILLHHKKDTDA

Sequences:

>Translated_147_residues
MNAEAIYRQVLLEYARKQEHRRVLEGPVGIERGHNPSCGDDLTLLIKREGDRIADVAFLGTGCAVSTASTNILIELIKGA
SVAQAQKTVALFFHMMAQQCLTDQERAHLQDACILACFASMPARIKCATLSWHNADILLHHKKDTDA
>Mature_147_residues
MNAEAIYRQVLLEYARKQEHRRVLEGPVGIERGHNPSCGDDLTLLIKREGDRIADVAFLGTGCAVSTASTNILIELIKGA
SVAQAQKTVALFFHMMAQQCLTDQERAHLQDACILACFASMPARIKCATLSWHNADILLHHKKDTDA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16213; Mature: 16213

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAEAIYRQVLLEYARKQEHRRVLEGPVGIERGHNPSCGDDLTLLIKREGDRIADVAFLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEHHEEEC
TGCAVSTASTNILIELIKGASVAQAQKTVALFFHMMAQQCLTDQERAHLQDACILACFAS
CCCEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
MPARIKCATLSWHNADILLHHKKDTDA
CCCEEEEEEEEECCCEEEEEECCCCCC
>Mature Secondary Structure
MNAEAIYRQVLLEYARKQEHRRVLEGPVGIERGHNPSCGDDLTLLIKREGDRIADVAFLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEHHEEEC
TGCAVSTASTNILIELIKGASVAQAQKTVALFFHMMAQQCLTDQERAHLQDACILACFAS
CCCEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
MPARIKCATLSWHNADILLHHKKDTDA
CCCEEEEEEEEECCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]