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The map label for this gene is sufB [C]

Identifier: 189025839

GI number: 189025839

Start: 667249

End: 668397

Strand: Direct

Name: sufB [C]

Synonym: TPASS_0613

Alternate gene names: 189025839

Gene position: 667249-668397 (Clockwise)

Preceding gene: 189025838

Following gene: 189025840

Centisome position: 58.56

GC content: 52.83

Gene sequence:

>1149_bases
ATGAAAAAAAGGGAATTTTTTAAACGGCTCGGGTATCACGCGCAGGACGTTGCTTCTCAGCCTTTTTCCAGAACACAGGT
TACTTCTAGCTCAGCGCTTGTGCGCTCATCATCCATAGAGCATTTTCTTTGCACCGAGCCAGAAAGGGCGGCGCGCGCGT
TTGACTTTCGCACACGCGATCGTCAGCGCCACTGCGGTCTGGGGGAAGCGTATGTACAAGAAGTAAAGGAAAAACGAAAT
GCAGGGGTGTATCTGAGTGTGCCGCGCACATCTGAGACGGTGCATGTACTCATCCGTTTTACCATGGACACGCATAACCG
CGTGCTATACGATCAGACCTTTCTTGATATACAGGAAGGGGCGCGCGTAAAAGTCCTCGTCTGTGTGGACGCGCAGGGGT
ATACCCCACAGGATGCTCCCGCACTCGTCGGTCCGCAAGCGCTTGAGCGTGCTCCGTTCAGGAATGGTTTGGTAAGCGTG
CAGGTGGGGCGTGGCGCATCGGTAGAGTTAATCAAAGTACAGAACACGCACCCTACGGCTGTGAACTTTGAAACGGTACA
CCTACACGCACAGGAAAGCGCGCAGGTGCGCTGCTACGACGTACAAATAGGTGCACAGATCTCAGGTGTTTCCAACTCCG
CCTTCCTTCGGGACGAGTGGGCACGTGTGGAAATTCACCCACTGTATTTCATTGATAAAGCGCGGCGTATGGATCTTGAA
CATAACCTCATCGTGGAAGGAAAAAATTCACACGCGCACATCTGCGCCTGTGGGGTGGTAAAAGACGGTGCACGCAAAAC
GTTCCGTGGAAATATTTTTTTGCACCGCGGGTGTAGCCATTCTGTAGCACGGTTCTCAGACCGTACCATTTTGCTTGACA
GAACTGCCGTGGGGGTTAGCATCCCCACTATCTTTTGTGACGAAGACGACGTTGTCGGGGAACACGCAGCCAGTTTTGAA
ACTATCGGCAGCGATGTGCTCTACTACCTTATGTCGCGCGGTCTTGATGAGTACGGTGCCAAGCGCCTCATCATAGAAGC
TGCGTTTAAACCCGTATTCGCCCTCATCGATGACGCTCACATCCGCGAGACACTCGTACGTAATTTTGACGAGAGCCTCG
ATCGCGCACATAGGAAGCGCAAGGCATGA

Upstream 100 bases:

>100_bases
AGGAATTGCCTCTTGAGTACGCCGTTGAACTGAATAACCTTATTTCTATTGAACTTGAGGGAGCGATCGGCTAACTCCCT
TCCTGAGGGCGCACAGCAGT

Downstream 100 bases:

>100_bases
GCGGCCCCAATTATAAAGCAGACTTTCCCCTGCTGTTGCGCAGTCCCCGCGTCCACTACCTAGACAGCGCGGCCACAACC
CAACGCCCTGCGCCGGTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Mtu pps1 intein [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKKREFFKRLGYHAQDVASQPFSRTQVTSSSALVRSSSIEHFLCTEPERAARAFDFRTRDRQRHCGLGEAYVQEVKEKRN
AGVYLSVPRTSETVHVLIRFTMDTHNRVLYDQTFLDIQEGARVKVLVCVDAQGYTPQDAPALVGPQALERAPFRNGLVSV
QVGRGASVELIKVQNTHPTAVNFETVHLHAQESAQVRCYDVQIGAQISGVSNSAFLRDEWARVEIHPLYFIDKARRMDLE
HNLIVEGKNSHAHICACGVVKDGARKTFRGNIFLHRGCSHSVARFSDRTILLDRTAVGVSIPTIFCDEDDVVGEHAASFE
TIGSDVLYYLMSRGLDEYGAKRLIIEAAFKPVFALIDDAHIRETLVRNFDESLDRAHRKRKA

Sequences:

>Translated_382_residues
MKKREFFKRLGYHAQDVASQPFSRTQVTSSSALVRSSSIEHFLCTEPERAARAFDFRTRDRQRHCGLGEAYVQEVKEKRN
AGVYLSVPRTSETVHVLIRFTMDTHNRVLYDQTFLDIQEGARVKVLVCVDAQGYTPQDAPALVGPQALERAPFRNGLVSV
QVGRGASVELIKVQNTHPTAVNFETVHLHAQESAQVRCYDVQIGAQISGVSNSAFLRDEWARVEIHPLYFIDKARRMDLE
HNLIVEGKNSHAHICACGVVKDGARKTFRGNIFLHRGCSHSVARFSDRTILLDRTAVGVSIPTIFCDEDDVVGEHAASFE
TIGSDVLYYLMSRGLDEYGAKRLIIEAAFKPVFALIDDAHIRETLVRNFDESLDRAHRKRKA
>Mature_382_residues
MKKREFFKRLGYHAQDVASQPFSRTQVTSSSALVRSSSIEHFLCTEPERAARAFDFRTRDRQRHCGLGEAYVQEVKEKRN
AGVYLSVPRTSETVHVLIRFTMDTHNRVLYDQTFLDIQEGARVKVLVCVDAQGYTPQDAPALVGPQALERAPFRNGLVSV
QVGRGASVELIKVQNTHPTAVNFETVHLHAQESAQVRCYDVQIGAQISGVSNSAFLRDEWARVEIHPLYFIDKARRMDLE
HNLIVEGKNSHAHICACGVVKDGARKTFRGNIFLHRGCSHSVARFSDRTILLDRTAVGVSIPTIFCDEDDVVGEHAASFE
TIGSDVLYYLMSRGLDEYGAKRLIIEAAFKPVFALIDDAHIRETLVRNFDESLDRAHRKRKA

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DOD-type homing endonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR007868
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141
- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF05203 Hom_end_hint; PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 43025; Mature: 43025

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKREFFKRLGYHAQDVASQPFSRTQVTSSSALVRSSSIEHFLCTEPERAARAFDFRTRD
CCHHHHHHHHCCCHHHHHCCCCCHHEECCCHHHHHHCCCCEEECCCHHHHHHHHCCCCCC
RQRHCGLGEAYVQEVKEKRNAGVYLSVPRTSETVHVLIRFTMDTHNRVLYDQTFLDIQEG
HHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEECCCCEEEEEHHEEECCCC
ARVKVLVCVDAQGYTPQDAPALVGPQALERAPFRNGLVSVQVGRGASVELIKVQNTHPTA
CEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCE
VNFETVHLHAQESAQVRCYDVQIGAQISGVSNSAFLRDEWARVEIHPLYFIDKARRMDLE
EEEEEEEEEECCCCEEEEEEEEECCEEECCCCCCEEECCCCEEEEEEEEEECHHHHCCCC
HNLIVEGKNSHAHICACGVVKDGARKTFRGNIFLHRGCSHSVARFSDRTILLDRTAVGVS
CCEEEECCCCCEEEEEEEEECCCCCCEEECCEEEECCCCCHHHHCCCCEEEEEECCCCEE
IPTIFCDEDDVVGEHAASFETIGSDVLYYLMSRGLDEYGAKRLIIEAAFKPVFALIDDAH
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEHHHHHHHHHHHCCHH
IRETLVRNFDESLDRAHRKRKA
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKREFFKRLGYHAQDVASQPFSRTQVTSSSALVRSSSIEHFLCTEPERAARAFDFRTRD
CCHHHHHHHHCCCHHHHHCCCCCHHEECCCHHHHHHCCCCEEECCCHHHHHHHHCCCCCC
RQRHCGLGEAYVQEVKEKRNAGVYLSVPRTSETVHVLIRFTMDTHNRVLYDQTFLDIQEG
HHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEECCCCEEEEEHHEEECCCC
ARVKVLVCVDAQGYTPQDAPALVGPQALERAPFRNGLVSVQVGRGASVELIKVQNTHPTA
CEEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCCCE
VNFETVHLHAQESAQVRCYDVQIGAQISGVSNSAFLRDEWARVEIHPLYFIDKARRMDLE
EEEEEEEEEECCCCEEEEEEEEECCEEECCCCCCEEECCCCEEEEEEEEEECHHHHCCCC
HNLIVEGKNSHAHICACGVVKDGARKTFRGNIFLHRGCSHSVARFSDRTILLDRTAVGVS
CCEEEECCCCCEEEEEEEEECCCCCCEEECCEEEECCCCCHHHHCCCCEEEEEECCCCEE
IPTIFCDEDDVVGEHAASFETIGSDVLYYLMSRGLDEYGAKRLIIEAAFKPVFALIDDAH
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEHHHHHHHHHHHCCHH
IRETLVRNFDESLDRAHRKRKA
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]