| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025819
Identifier: 189025819
GI number: 189025819
Start: 644188
End: 645690
Strand: Direct
Name: 189025819
Synonym: TPASS_0592
Alternate gene names: NA
Gene position: 644188-645690 (Clockwise)
Preceding gene: 189025813
Following gene: 189025820
Centisome position: 56.53
GC content: 52.1
Gene sequence:
>1503_bases GTGGTCTTTCGTCGCACAGTGGCACTCGCGCTTCTTCTGCGTACGCTCCCCTGCGCCGCGCACTTCGGAAACCGTGACCG CACGTTCTACGACCTTAACAACGCGCCCCTTGCTCTGCGCGCCATCCAGGACGCATATCCTCATCTCAACGCGGTCATTG CCTATGACCCGCGGGAACAGGACTGGCTCATCCGTTCAGACGGGCGCACCCTCTACTGGGCAGAGGGGCGTCTTTTACCT CGAGAACACCGTGATCAAGCCCACGACTGGCGCCCCATCATCGATTATGTCTACGCGCGAGAAGTCCTAGACCCCGCGCA CCTTTTTCCAGAAGAAATACACGCGCTTAGGCCTAAGACGCTTGCAATTAAACGCAGCGCTACAAAACCCTATCACGACG CTTTTTTCACGTGGCTCTACGGTCCTGCCACACGTTCGGAAATCAACGCTCGTCTCGCGCGCGACTATACGTTCTTAGGA AAGCCCGTATACGTACACAAAGCACTCATCACACGCTTAAACGCAGTACAGGAAAAAATCCTCACTGCCGCGAAGACGCA TGCTCACGTACAAAAGTTTATCGAGGATCTTTTACGCGTCGACGGCTTTAACTGGCGTGAGATTTCTGATTCTAGACAAA AGAGTAACCACAGCTGGGGGATCGCGTTGGATCTTATGCCCAAGAATTGGCAACGCCACACCATGTACTGGAATTGGGAA GCTGCGCATAACGAAGATTGGATGCACATCCCCATAAAAAAGCGCTGGGCTCCACCTGCAGAAATCATCAGTCTTTTCGA AAGCGAAGGGTTTATCTGGGGCGGACACTGGATGCTGTGGGACACTATGCACTTCGAATACCGGCCGGAATTACTCGCTG TACGTAAAATCCTTGCCGAGGGGAACCGCTATGACTTTCAAGAACAAAATATAGTGGTGCATGCAGATGATTTTCCTGCG CAATACTTTTCTCCCAAAGAAGTATTCGGCACAGATGAGAAGGAGCACATTACCTATGCAGAATCCTGCGTTCGTGCAAC GCACGCAAGTGTTAAAGAACTCGTTCGTGCACGCACGCTGGTAGCGCGGTTTTCTCCTATGCGTCGGCTGCACGTGTATG CACCTCCTGAAAGCATTCACAACAGCATAGATACAGCCCTATTACGCATGACCGCACAACTGAAGAAAAATTACACAAAT GCGAAAATACGGAACAATTCTCGTTTGCTTTCAAAAAAGCATGCTCAGACACGCGCGTCTCGCAGAAGCGCAGATGTGTA CACGGTATCGTGCCGTCATGCTCAGGCAATCGCACTGCAGTATCCACACGCCCTGTCTTGGCAAAGTAAAGAACGAAGCG ATGCGCTGTGGATTGCGCTTTTTTCCGTACGGCAAGAAGCGGCACGACGCTCCGTGTGCACACCCTCGTCTAAGGAACAA TGCATGACGCACGCACTTTCTTCATGCGTGGATCTTGCACGTACGCACATCCTGTTGCCATAG
Upstream 100 bases:
>100_bases TCCTGCCTTCCCCCTGCCTCCCCGTGCTTGACGCAAGAAACAATAAAATTGCTGCCTATGATTTCTTTAGCCGCGCGTAT AATGCGCCGAGACACCGGGC
Downstream 100 bases:
>100_bases GGCGCTTCTTCCCCCTCTCTTCCCCTACTCACACACCACAGGGTACACTTATGAAAAGTCATGGCACCATGTGCTCAAGG AATGCGCTTCTTTTGCCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MVFRRTVALALLLRTLPCAAHFGNRDRTFYDLNNAPLALRAIQDAYPHLNAVIAYDPREQDWLIRSDGRTLYWAEGRLLP REHRDQAHDWRPIIDYVYAREVLDPAHLFPEEIHALRPKTLAIKRSATKPYHDAFFTWLYGPATRSEINARLARDYTFLG KPVYVHKALITRLNAVQEKILTAAKTHAHVQKFIEDLLRVDGFNWREISDSRQKSNHSWGIALDLMPKNWQRHTMYWNWE AAHNEDWMHIPIKKRWAPPAEIISLFESEGFIWGGHWMLWDTMHFEYRPELLAVRKILAEGNRYDFQEQNIVVHADDFPA QYFSPKEVFGTDEKEHITYAESCVRATHASVKELVRARTLVARFSPMRRLHVYAPPESIHNSIDTALLRMTAQLKKNYTN AKIRNNSRLLSKKHAQTRASRRSADVYTVSCRHAQAIALQYPHALSWQSKERSDALWIALFSVRQEAARRSVCTPSSKEQ CMTHALSSCVDLARTHILLP
Sequences:
>Translated_500_residues MVFRRTVALALLLRTLPCAAHFGNRDRTFYDLNNAPLALRAIQDAYPHLNAVIAYDPREQDWLIRSDGRTLYWAEGRLLP REHRDQAHDWRPIIDYVYAREVLDPAHLFPEEIHALRPKTLAIKRSATKPYHDAFFTWLYGPATRSEINARLARDYTFLG KPVYVHKALITRLNAVQEKILTAAKTHAHVQKFIEDLLRVDGFNWREISDSRQKSNHSWGIALDLMPKNWQRHTMYWNWE AAHNEDWMHIPIKKRWAPPAEIISLFESEGFIWGGHWMLWDTMHFEYRPELLAVRKILAEGNRYDFQEQNIVVHADDFPA QYFSPKEVFGTDEKEHITYAESCVRATHASVKELVRARTLVARFSPMRRLHVYAPPESIHNSIDTALLRMTAQLKKNYTN AKIRNNSRLLSKKHAQTRASRRSADVYTVSCRHAQAIALQYPHALSWQSKERSDALWIALFSVRQEAARRSVCTPSSKEQ CMTHALSSCVDLARTHILLP >Mature_500_residues MVFRRTVALALLLRTLPCAAHFGNRDRTFYDLNNAPLALRAIQDAYPHLNAVIAYDPREQDWLIRSDGRTLYWAEGRLLP REHRDQAHDWRPIIDYVYAREVLDPAHLFPEEIHALRPKTLAIKRSATKPYHDAFFTWLYGPATRSEINARLARDYTFLG KPVYVHKALITRLNAVQEKILTAAKTHAHVQKFIEDLLRVDGFNWREISDSRQKSNHSWGIALDLMPKNWQRHTMYWNWE AAHNEDWMHIPIKKRWAPPAEIISLFESEGFIWGGHWMLWDTMHFEYRPELLAVRKILAEGNRYDFQEQNIVVHADDFPA QYFSPKEVFGTDEKEHITYAESCVRATHASVKELVRARTLVARFSPMRRLHVYAPPESIHNSIDTALLRMTAQLKKNYTN AKIRNNSRLLSKKHAQTRASRRSADVYTVSCRHAQAIALQYPHALSWQSKERSDALWIALFSVRQEAARRSVCTPSSKEQ CMTHALSSCVDLARTHILLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58269; Mature: 58269
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFRRTVALALLLRTLPCAAHFGNRDRTFYDLNNAPLALRAIQDAYPHLNAVIAYDPREQ CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCC DWLIRSDGRTLYWAEGRLLPREHRDQAHDWRPIIDYVYAREVLDPAHLFPEEIHALRPKT CEEEECCCCEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHCCHHHHHHCCCCE LAIKRSATKPYHDAFFTWLYGPATRSEINARLARDYTFLGKPVYVHKALITRLNAVQEKI EEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHH LTAAKTHAHVQKFIEDLLRVDGFNWREISDSRQKSNHSWGIALDLMPKNWQRHTMYWNWE HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCCCCCCEEEEEECCCCCCCCEEEEEEE AAHNEDWMHIPIKKRWAPPAEIISLFESEGFIWGGHWMLWDTMHFEYRPELLAVRKILAE CCCCCCEEECCHHHCCCCHHHHHHHHHCCCEEECCCEEEEEEECCCCCHHHHHHHHHHHC GNRYDFQEQNIVVHADDFPAQYFSPKEVFGTDEKEHITYAESCVRATHASVKELVRARTL CCCCCCCCCCEEEEECCCCHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VARFSPMRRLHVYAPPESIHNSIDTALLRMTAQLKKNYTNAKIRNNSRLLSKKHAQTRAS HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHH RRSADVYTVSCRHAQAIALQYPHALSWQSKERSDALWIALFSVRQEAARRSVCTPSSKEQ HCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH CMTHALSSCVDLARTHILLP HHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVFRRTVALALLLRTLPCAAHFGNRDRTFYDLNNAPLALRAIQDAYPHLNAVIAYDPREQ CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCC DWLIRSDGRTLYWAEGRLLPREHRDQAHDWRPIIDYVYAREVLDPAHLFPEEIHALRPKT CEEEECCCCEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHCCHHHHHHCCCCE LAIKRSATKPYHDAFFTWLYGPATRSEINARLARDYTFLGKPVYVHKALITRLNAVQEKI EEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHH LTAAKTHAHVQKFIEDLLRVDGFNWREISDSRQKSNHSWGIALDLMPKNWQRHTMYWNWE HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCCCCCCEEEEEECCCCCCCCEEEEEEE AAHNEDWMHIPIKKRWAPPAEIISLFESEGFIWGGHWMLWDTMHFEYRPELLAVRKILAE CCCCCCEEECCHHHCCCCHHHHHHHHHCCCEEECCCEEEEEEECCCCCHHHHHHHHHHHC GNRYDFQEQNIVVHADDFPAQYFSPKEVFGTDEKEHITYAESCVRATHASVKELVRARTL CCCCCCCCCCEEEEECCCCHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VARFSPMRRLHVYAPPESIHNSIDTALLRMTAQLKKNYTNAKIRNNSRLLSKKHAQTRAS HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHH RRSADVYTVSCRHAQAIALQYPHALSWQSKERSDALWIALFSVRQEAARRSVCTPSSKEQ HCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH CMTHALSSCVDLARTHILLP HHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA