Click here to switch to the map view.

The map label for this gene is ypdF [C]

Identifier: 189025797

GI number: 189025797

Start: 618620

End: 620944

Strand: Reverse

Name: ypdF [C]

Synonym: TPASS_0569

Alternate gene names: 189025797

Gene position: 620944-618620 (Counterclockwise)

Preceding gene: 189025798

Following gene: 189025796

Centisome position: 54.49

GC content: 56.52

Gene sequence:

>2325_bases
GTGATTCCACTAGGTAAGCGGCATGGGCATTCTGCTGTGGCCGTGTGTTCGCGGGGTGTTTCTGTGTTCAGAGGAGAGAA
GGCGATGGATGGGGTGCGGGGGCGCCTGAGTGCCCTGCGTTCGCTGATGCGTGCGCAAGGGGTAGATATTTGTTATATCT
CCGGTGAGAACGCGCATGGGCAGATAGATGGTGCGCGTGAATATTTTTCTGGATTTACAGGCTCTGCAGGAATAGTGGTG
GTGACCGCACAACGTGCGTTTTTGTGGACAGATGGACGGTATTTTATCCAGGCTGAGCGTGAGCTGTCGGCATGTGAAGT
GTGCCTTTTTCGTACAGGGCAGGCGGGCGTACCTCGGGTAACTGAGCTTTTGCGTACAGAACTCCGTGCTTTTTCATCCG
GGCCTGGGCACGGAGGGGGAACGCTCGCAGTGGATGGCCGTACGATTTCTGCGGCTGTATGGGAGCAGTTTCAGCAGGAG
CTTGTGGATGTATCGCTTCGCCTAGACTTTGATGGGGCGCTCCTGCTACCGCAGGAGCATCGCGTTTCCGTAGTTCCTTC
CCCTGCGTTTTTGTTGGATGAGCGCTACACGGGGTTGAGTGCGGCGCAAAAGCTCACCCAACTGCGCGCAGCGCTCAGTG
CACGCAGCTGTGATGCAACGGTGTTGTCCACATTGGATGATGTGTGCTGGCTCACCAATGTGCGCGCACACGATGTGCCG
TGTACACCGCTGTTGGTGGCATACATGGTCGTCACGCACACCCGTGCCTTTCTTTATGTGGATATGCGCAAAATTTCTTC
TGCATTGCATCAAGCTTTGTATGCGCAGGGCGTTGAGTGTATGCCGTACGATACTTTTTTTGATCAGGTGTGTGCGCGCT
GTGCGGATCAGGAACCGACGGTACATGCTGTGGGGAAAGGAAGAGCAGGAGTGCAGGAAGTGGCAGGCAGAACGCCAGTG
GTGTTGTTGGACTTTGAGCGTTCGTGTGCTGCACTGGTGGATCTCTTTCGTGCATCGCCGCAGGTGTGTAGACCGCAGGT
GGAACGATCCGCTCCTTCCGGTTCGTTATCTTCTGTGCTGGGCATAGAAGAGGATGGTACTGAGACCAGCAGAGGTGGGA
AAAGTGCGTGTGCGTTGCAGTCTGCACGCGACGCTCTGGCAGCAGGGAAAGAAAAGGAGAACAAAGAGGAGCGGGGACAG
ACCATGTGCTTCTCCGTTTGTCGTGGACTTTTGCCAACTGTAGCGCTCAAAGCATTAAAGAACGACACCGAGCGAGCCAA
TGTGCACCAGGCAATGATACAGGATGGGATTGCGCTGGTAAAAACGCTGCAGTGGGTGTACCAGCAGCTTGACGTGGGTG
CAGACGTTGATGAATGCGCTGTAGCGGAGTTTGTACGTGCTGCCCGGGCGGTGTCTCCGTCTTTCATTGAAGAAAGCTTT
CACACCATTGCAGGATACGGGGCGAACGCAGCAATGGTGCATTACCGCCCCGTGCGTTTTTCAGCTTTACACCCTGCTGC
GGGTCAAACGGCAGCACTGCTTCGCGCGCGTGGTTTTTTATTATTGGATTCTGGCGCGCATTATCGTGAGGGTACCACCG
ATGTGACGCGCACGCTGGCTCTCGGTCCTTTGACAGATGTGCAGCGTGCAGACTACACGCTGGTATTGCAGGCGCACAGT
GCGCTTGCGCGTGCGCGCTTTCCTGCAGGGACCAGTGGGGCGGTGCTCGACGGAATTGCCCGGGCTCCGCTGTGGGCACA
GGGACGAGACTACCCACATGGGACGGGGCATGGGGTGGGTTTTTGTCTTTCAGTGCATGAGGGTCCCTATAGTATTTCTC
CGAGTGCTCCCGGGAGAGGAGGAACTGCACGAGGCATTGGGGCAGAGCACACGGGAGATCCTCCCTTTTTTTCTGAGGAG
GCGGCGTGGCAGCTGCGCCCGGGTATGCTCCTTTCCAATGAGCCTGGGGTGTATGTGGCTGGCTCTCATGGCGTGCGCAT
AGAAAATCTTATGTGGGTGGTACAGGCGCATGAGTCTGACGCGCAGTGTGTGTGGAAGGAAGGAGGGGAGGGAAAGGAGG
AGAACGCGGCGGCGCGTGAGTGTACGGGTGCAGATAGGATGCAACCGTCACGATGCCGAAGTTTCTATGGATTTCAAACT
GCAACGCTGTGTCCAATTGACACGCGGCCGCTCGTGCGAGAACGATTGCACGATGAAGATATTGCGTGGCTGAATGCCTA
TCACCTACGGGTGTATGTAACGCTCGCGCCGTTTTTAGATGCGCGTACGCGCGCCTTTTTGCGCACGTGCTGTCGTGCGC
TATAG

Upstream 100 bases:

>100_bases
GCTCGCTACGCGGATGCCACCTCAGAAAAAAAGTTCCAACGAGTTACCGGATGGGTTAGTGATTTTGAGTCACTAGAATT
GAATCGGTGTTCTGCGTAGT

Downstream 100 bases:

>100_bases
CGTTTTCCTGTTGATTGGTGTTATACGCAGATCTTGATTTTTGATCATAAAGGACATTAGCTTAGGCGGGTGCACTGCAT
GTGGTGTCTGAAAAGATGTC

Product: aminopeptidase P

Products: NA

Alternate protein names: Peptidase; Aminopeptidase P; Xaa-Pro Aminopeptidase; Aminopeptidase; Metallopeptidase; M24 Family Metallopeptidase; M24 Family Peptidase; X-Pro Aminopeptidase; Aminopeptidase P Protein; M24B Family Peptidase; Xaa-Pro Dipeptidase; M24 Metallopeptidase Family Protein; Creatinase; X-Prolyl Aminopeptidase; M24B Subfamily Peptidase; Metallopeptidase Family M; Cytoplasmic Peptidase; Metallopeptidase Family; Metallopeptidase Protein; M24 Family Aminopeptidase

Number of amino acids: Translated: 774; Mature: 774

Protein sequence:

>774_residues
MIPLGKRHGHSAVAVCSRGVSVFRGEKAMDGVRGRLSALRSLMRAQGVDICYISGENAHGQIDGAREYFSGFTGSAGIVV
VTAQRAFLWTDGRYFIQAERELSACEVCLFRTGQAGVPRVTELLRTELRAFSSGPGHGGGTLAVDGRTISAAVWEQFQQE
LVDVSLRLDFDGALLLPQEHRVSVVPSPAFLLDERYTGLSAAQKLTQLRAALSARSCDATVLSTLDDVCWLTNVRAHDVP
CTPLLVAYMVVTHTRAFLYVDMRKISSALHQALYAQGVECMPYDTFFDQVCARCADQEPTVHAVGKGRAGVQEVAGRTPV
VLLDFERSCAALVDLFRASPQVCRPQVERSAPSGSLSSVLGIEEDGTETSRGGKSACALQSARDALAAGKEKENKEERGQ
TMCFSVCRGLLPTVALKALKNDTERANVHQAMIQDGIALVKTLQWVYQQLDVGADVDECAVAEFVRAARAVSPSFIEESF
HTIAGYGANAAMVHYRPVRFSALHPAAGQTAALLRARGFLLLDSGAHYREGTTDVTRTLALGPLTDVQRADYTLVLQAHS
ALARARFPAGTSGAVLDGIARAPLWAQGRDYPHGTGHGVGFCLSVHEGPYSISPSAPGRGGTARGIGAEHTGDPPFFSEE
AAWQLRPGMLLSNEPGVYVAGSHGVRIENLMWVVQAHESDAQCVWKEGGEGKEENAAARECTGADRMQPSRCRSFYGFQT
ATLCPIDTRPLVRERLHDEDIAWLNAYHLRVYVTLAPFLDARTRAFLRTCCRAL

Sequences:

>Translated_774_residues
MIPLGKRHGHSAVAVCSRGVSVFRGEKAMDGVRGRLSALRSLMRAQGVDICYISGENAHGQIDGAREYFSGFTGSAGIVV
VTAQRAFLWTDGRYFIQAERELSACEVCLFRTGQAGVPRVTELLRTELRAFSSGPGHGGGTLAVDGRTISAAVWEQFQQE
LVDVSLRLDFDGALLLPQEHRVSVVPSPAFLLDERYTGLSAAQKLTQLRAALSARSCDATVLSTLDDVCWLTNVRAHDVP
CTPLLVAYMVVTHTRAFLYVDMRKISSALHQALYAQGVECMPYDTFFDQVCARCADQEPTVHAVGKGRAGVQEVAGRTPV
VLLDFERSCAALVDLFRASPQVCRPQVERSAPSGSLSSVLGIEEDGTETSRGGKSACALQSARDALAAGKEKENKEERGQ
TMCFSVCRGLLPTVALKALKNDTERANVHQAMIQDGIALVKTLQWVYQQLDVGADVDECAVAEFVRAARAVSPSFIEESF
HTIAGYGANAAMVHYRPVRFSALHPAAGQTAALLRARGFLLLDSGAHYREGTTDVTRTLALGPLTDVQRADYTLVLQAHS
ALARARFPAGTSGAVLDGIARAPLWAQGRDYPHGTGHGVGFCLSVHEGPYSISPSAPGRGGTARGIGAEHTGDPPFFSEE
AAWQLRPGMLLSNEPGVYVAGSHGVRIENLMWVVQAHESDAQCVWKEGGEGKEENAAARECTGADRMQPSRCRSFYGFQT
ATLCPIDTRPLVRERLHDEDIAWLNAYHLRVYVTLAPFLDARTRAFLRTCCRAL
>Mature_774_residues
MIPLGKRHGHSAVAVCSRGVSVFRGEKAMDGVRGRLSALRSLMRAQGVDICYISGENAHGQIDGAREYFSGFTGSAGIVV
VTAQRAFLWTDGRYFIQAERELSACEVCLFRTGQAGVPRVTELLRTELRAFSSGPGHGGGTLAVDGRTISAAVWEQFQQE
LVDVSLRLDFDGALLLPQEHRVSVVPSPAFLLDERYTGLSAAQKLTQLRAALSARSCDATVLSTLDDVCWLTNVRAHDVP
CTPLLVAYMVVTHTRAFLYVDMRKISSALHQALYAQGVECMPYDTFFDQVCARCADQEPTVHAVGKGRAGVQEVAGRTPV
VLLDFERSCAALVDLFRASPQVCRPQVERSAPSGSLSSVLGIEEDGTETSRGGKSACALQSARDALAAGKEKENKEERGQ
TMCFSVCRGLLPTVALKALKNDTERANVHQAMIQDGIALVKTLQWVYQQLDVGADVDECAVAEFVRAARAVSPSFIEESF
HTIAGYGANAAMVHYRPVRFSALHPAAGQTAALLRARGFLLLDSGAHYREGTTDVTRTLALGPLTDVQRADYTLVLQAHS
ALARARFPAGTSGAVLDGIARAPLWAQGRDYPHGTGHGVGFCLSVHEGPYSISPSAPGRGGTARGIGAEHTGDPPFFSEE
AAWQLRPGMLLSNEPGVYVAGSHGVRIENLMWVVQAHESDAQCVWKEGGEGKEENAAARECTGADRMQPSRCRSFYGFQT
ATLCPIDTRPLVRERLHDEDIAWLNAYHLRVYVTLAPFLDARTRAFLRTCCRAL

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI264681563, Length=343, Percent_Identity=34.402332361516, Blast_Score=185, Evalue=2e-46,
Organism=Homo sapiens, GI264681565, Length=343, Percent_Identity=31.1953352769679, Blast_Score=156, Evalue=9e-38,
Organism=Homo sapiens, GI93141226, Length=351, Percent_Identity=30.7692307692308, Blast_Score=144, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17509539, Length=362, Percent_Identity=32.8729281767956, Blast_Score=178, Evalue=9e-45,
Organism=Caenorhabditis elegans, GI25149105, Length=350, Percent_Identity=26, Blast_Score=104, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6322999, Length=357, Percent_Identity=33.3333333333333, Blast_Score=193, Evalue=8e-50,
Organism=Drosophila melanogaster, GI17137632, Length=361, Percent_Identity=34.6260387811634, Blast_Score=182, Evalue=8e-46,
Organism=Drosophila melanogaster, GI161078230, Length=263, Percent_Identity=26.9961977186312, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI21357287, Length=263, Percent_Identity=26.9961977186312, Blast_Score=103, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.-.- [C]

Molecular weight: Translated: 83724; Mature: 83724

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLGKRHGHSAVAVCSRGVSVFRGEKAMDGVRGRLSALRSLMRAQGVDICYISGENAHG
CCCCCCCCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
QIDGAREYFSGFTGSAGIVVVTAQRAFLWTDGRYFIQAERELSACEVCLFRTGQAGVPRV
CCCCHHHHHCCCCCCCCEEEEEECEEEEEECCEEEEEECCHHHHHHHHHEECCCCCCHHH
TELLRTELRAFSSGPGHGGGTLAVDGRTISAAVWEQFQQELVDVSLRLDFDGALLLPQEH
HHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCEEECCCCC
RVSVVPSPAFLLDERYTGLSAAQKLTQLRAALSARSCDATVLSTLDDVCWLTNVRAHDVP
CEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
CTPLLVAYMVVTHTRAFLYVDMRKISSALHQALYAQGVECMPYDTFFDQVCARCADQEPT
CHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
VHAVGKGRAGVQEVAGRTPVVLLDFERSCAALVDLFRASPQVCRPQVERSAPSGSLSSVL
EEECCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHCHHHHHCCCCCCHHHHC
GIEEDGTETSRGGKSACALQSARDALAAGKEKENKEERGQTMCFSVCRGLLPTVALKALK
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NDTERANVHQAMIQDGIALVKTLQWVYQQLDVGADVDECAVAEFVRAARAVSPSFIEESF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
HTIAGYGANAAMVHYRPVRFSALHPAAGQTAALLRARGFLLLDSGAHYREGTTDVTRTLA
HHHHCCCCCEEEEEEECCEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
LGPLTDVQRADYTLVLQAHSALARARFPAGTSGAVLDGIARAPLWAQGRDYPHGTGHGVG
CCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEE
FCLSVHEGPYSISPSAPGRGGTARGIGAEHTGDPPFFSEEAAWQLRPGMLLSNEPGVYVA
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCEEEE
GSHGVRIENLMWVVQAHESDAQCVWKEGGEGKEENAAARECTGADRMQPSRCRSFYGFQT
CCCCCEEHHEEEEEEECCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCC
ATLCPIDTRPLVRERLHDEDIAWLNAYHLRVYVTLAPFLDARTRAFLRTCCRAL
EEECCCCCCHHHHHHCCCCCHHEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIPLGKRHGHSAVAVCSRGVSVFRGEKAMDGVRGRLSALRSLMRAQGVDICYISGENAHG
CCCCCCCCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
QIDGAREYFSGFTGSAGIVVVTAQRAFLWTDGRYFIQAERELSACEVCLFRTGQAGVPRV
CCCCHHHHHCCCCCCCCEEEEEECEEEEEECCEEEEEECCHHHHHHHHHEECCCCCCHHH
TELLRTELRAFSSGPGHGGGTLAVDGRTISAAVWEQFQQELVDVSLRLDFDGALLLPQEH
HHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCEEECCCCC
RVSVVPSPAFLLDERYTGLSAAQKLTQLRAALSARSCDATVLSTLDDVCWLTNVRAHDVP
CEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
CTPLLVAYMVVTHTRAFLYVDMRKISSALHQALYAQGVECMPYDTFFDQVCARCADQEPT
CHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
VHAVGKGRAGVQEVAGRTPVVLLDFERSCAALVDLFRASPQVCRPQVERSAPSGSLSSVL
EEECCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHCCCHHHCHHHHHCCCCCCHHHHC
GIEEDGTETSRGGKSACALQSARDALAAGKEKENKEERGQTMCFSVCRGLLPTVALKALK
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NDTERANVHQAMIQDGIALVKTLQWVYQQLDVGADVDECAVAEFVRAARAVSPSFIEESF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
HTIAGYGANAAMVHYRPVRFSALHPAAGQTAALLRARGFLLLDSGAHYREGTTDVTRTLA
HHHHCCCCCEEEEEEECCEEEECCCCCCHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHH
LGPLTDVQRADYTLVLQAHSALARARFPAGTSGAVLDGIARAPLWAQGRDYPHGTGHGVG
CCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEE
FCLSVHEGPYSISPSAPGRGGTARGIGAEHTGDPPFFSEEAAWQLRPGMLLSNEPGVYVA
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCEEEE
GSHGVRIENLMWVVQAHESDAQCVWKEGGEGKEENAAARECTGADRMQPSRCRSFYGFQT
CCCCCEEHHEEEEEEECCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCC
ATLCPIDTRPLVRERLHDEDIAWLNAYHLRVYVTLAPFLDARTRAFLRTCCRAL
EEECCCCCCHHHHHHCCCCCHHEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA