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The map label for this gene is spsE

Identifier: 189025790

GI number: 189025790

Start: 610962

End: 612098

Strand: Direct

Name: spsE

Synonym: TPASS_0562

Alternate gene names: NA

Gene position: 610962-612098 (Clockwise)

Preceding gene: 189025787

Following gene: 189025791

Centisome position: 53.62

GC content: 57.08

Gene sequence:

>1137_bases
ATGTTCACGTGCGGGGGACGTTGTTTTCGCCCAGACGCGGATATACTCACCATCGCTGAAATCGGCTCCGCACACGCGGG
CTCGTTTGACCGCGCGCGGGCGCTCATAGACGCAGCTGCAGACGCAGCAGCAGCTGCGGTCAAATTCCAGCTCATCTACG
CGCACGAAATACTGCACCCGCTGACGGGGGCTGTCCGTCTTCCCAGCGGAGCAGTTTCCCTCTACCAGCGCTTTGAGGAG
TTAGAAGTTCCACTTTCCTTTTATGCGCAGTGCTTTAACCACGCACGAAGCAGGGGTATGCTAGTCGGCATCAGCCCCTT
TGGCCCGCGCTCTGCAACAGAGGCGCTCGCCTTGAAACCAGACTTCCTCAAGGTAGCTTCCCCAGAGCTCAACTACCCCA
CCCTTATCTCCACACTCGCTGCTGCAGAACTTCCACTTATACTTTCAAGTGGAGTCTGCCTCCTGAAGGAAATCGAAGGG
GCCCTTGCCCAATGCCGCCAGTATACCAAGCAGGGCAGCTCCCACGCCTTACTGCACTGCATCACCGCATACCCTGCTCC
AGAGACAGAGTACAACCTTGCGCTGCTGCCTGCGCTTGCTACCATCTTCAATATCAACGTCGGCGTCAGCGACCACAGCG
TAGACCCGCTCCTTGTCCCGCTCCTTGCCCGTGCACACGGCGCCTGCATCGTCGAAAAACACATTTGCCTCTCGCGAACA
GATGCAGGACTCGATGACTCCATTGCATTAGATCCTGCCGACTTTCGCACCATGACAGCGGCGCTCAACTCATGCGCTCG
CCGTTCTCCCTCACAGATTATCTCCTTTCTACACGAGCGTGGGTATGCCCCGCACGTTGTTCGCGCCGTCATCGGTTCAG
GAGAGAAGGTGCTTGCTCCCTCAGAACGCGCTCACTACCAGAAATCTAACCGCTCTCTTCACTATCTCCACGCATACCCC
CGTGGGACTGTGCTCCAAAAAGAGAACCTGGTAATAGTGCGCAGCGAGGCAAATCTTTCTGCCGGGGAAGCTCCCGAACA
CGCCAACCTGTTTGTGGGGGCAGTACTCCAACGCTCCGTACACGCAGGAGAAGGCGCACGCTTCGGCGACATTATTCAAA
AAGGAACATGTCTATGA

Upstream 100 bases:

>100_bases
CTATCTTAGCACCTGCCTCTTACCCATACAAACCACGGCAAGGATTGCCTACCGATCAGGAAAGCTATACACCAATCACG
CGTTTGGCGTACAATGCCCC

Downstream 100 bases:

>100_bases
CCAGCTTTTACGAGCGAATCGGTGCTATCCTACGCGACCGGCTCAACTCCGACGAAGACCCCTTCGATCAATGGGACAAC
CGCGGCGGCAAGTACCGCAC

Product: spore coat polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MFTCGGRCFRPDADILTIAEIGSAHAGSFDRARALIDAAADAAAAAVKFQLIYAHEILHPLTGAVRLPSGAVSLYQRFEE
LEVPLSFYAQCFNHARSRGMLVGISPFGPRSATEALALKPDFLKVASPELNYPTLISTLAAAELPLILSSGVCLLKEIEG
ALAQCRQYTKQGSSHALLHCITAYPAPETEYNLALLPALATIFNINVGVSDHSVDPLLVPLLARAHGACIVEKHICLSRT
DAGLDDSIALDPADFRTMTAALNSCARRSPSQIISFLHERGYAPHVVRAVIGSGEKVLAPSERAHYQKSNRSLHYLHAYP
RGTVLQKENLVIVRSEANLSAGEAPEHANLFVGAVLQRSVHAGEGARFGDIIQKGTCL

Sequences:

>Translated_378_residues
MFTCGGRCFRPDADILTIAEIGSAHAGSFDRARALIDAAADAAAAAVKFQLIYAHEILHPLTGAVRLPSGAVSLYQRFEE
LEVPLSFYAQCFNHARSRGMLVGISPFGPRSATEALALKPDFLKVASPELNYPTLISTLAAAELPLILSSGVCLLKEIEG
ALAQCRQYTKQGSSHALLHCITAYPAPETEYNLALLPALATIFNINVGVSDHSVDPLLVPLLARAHGACIVEKHICLSRT
DAGLDDSIALDPADFRTMTAALNSCARRSPSQIISFLHERGYAPHVVRAVIGSGEKVLAPSERAHYQKSNRSLHYLHAYP
RGTVLQKENLVIVRSEANLSAGEAPEHANLFVGAVLQRSVHAGEGARFGDIIQKGTCL
>Mature_378_residues
MFTCGGRCFRPDADILTIAEIGSAHAGSFDRARALIDAAADAAAAAVKFQLIYAHEILHPLTGAVRLPSGAVSLYQRFEE
LEVPLSFYAQCFNHARSRGMLVGISPFGPRSATEALALKPDFLKVASPELNYPTLISTLAAAELPLILSSGVCLLKEIEG
ALAQCRQYTKQGSSHALLHCITAYPAPETEYNLALLPALATIFNINVGVSDHSVDPLLVPLLARAHGACIVEKHICLSRT
DAGLDDSIALDPADFRTMTAALNSCARRSPSQIISFLHERGYAPHVVRAVIGSGEKVLAPSERAHYQKSNRSLHYLHAYP
RGTVLQKENLVIVRSEANLSAGEAPEHANLFVGAVLQRSVHAGEGARFGDIIQKGTCL

Specific function: Unknown

COG id: COG2089

COG function: function code M; Sialic acid synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spsE [H]

Homologues:

Organism=Homo sapiens, GI12056473, Length=358, Percent_Identity=24.8603351955307, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21357081, Length=334, Percent_Identity=26.0479041916168, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006190
- InterPro:   IPR013785
- InterPro:   IPR013132
- InterPro:   IPR013974 [H]

Pfam domain/function: PF03102 NeuB; PF08666 SAF [H]

EC number: NA

Molecular weight: Translated: 40533; Mature: 40533

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50844 AFP_LIKE ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTCGGRCFRPDADILTIAEIGSAHAGSFDRARALIDAAADAAAAAVKFQLIYAHEILHP
CCCCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGAVRLPSGAVSLYQRFEELEVPLSFYAQCFNHARSRGMLVGISPFGPRSATEALALKP
HHCCEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHCCCC
DFLKVASPELNYPTLISTLAAAELPLILSSGVCLLKEIEGALAQCRQYTKQGSSHALLHC
CHHHHCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ITAYPAPETEYNLALLPALATIFNINVGVSDHSVDPLLVPLLARAHGACIVEKHICLSRT
EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHCCC
DAGLDDSIALDPADFRTMTAALNSCARRSPSQIISFLHERGYAPHVVRAVIGSGEKVLAP
CCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEECC
SERAHYQKSNRSLHYLHAYPRGTVLQKENLVIVRSEANLSAGEAPEHANLFVGAVLQRSV
CHHHHHHHCCCCEEEEEECCCCCEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
HAGEGARFGDIIQKGTCL
CCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MFTCGGRCFRPDADILTIAEIGSAHAGSFDRARALIDAAADAAAAAVKFQLIYAHEILHP
CCCCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGAVRLPSGAVSLYQRFEELEVPLSFYAQCFNHARSRGMLVGISPFGPRSATEALALKP
HHCCEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHCCCC
DFLKVASPELNYPTLISTLAAAELPLILSSGVCLLKEIEGALAQCRQYTKQGSSHALLHC
CHHHHCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ITAYPAPETEYNLALLPALATIFNINVGVSDHSVDPLLVPLLARAHGACIVEKHICLSRT
EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHCCC
DAGLDDSIALDPADFRTMTAALNSCARRSPSQIISFLHERGYAPHVVRAVIGSGEKVLAP
CCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEECC
SERAHYQKSNRSLHYLHAYPRGTVLQKENLVIVRSEANLSAGEAPEHANLFVGAVLQRSV
CHHHHHHHCCCCEEEEEECCCCCEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
HAGEGARFGDIIQKGTCL
CCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]