| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025786
Identifier: 189025786
GI number: 189025786
Start: 605616
End: 606524
Strand: Direct
Name: 189025786
Synonym: TPASS_0558
Alternate gene names: NA
Gene position: 605616-606524 (Clockwise)
Preceding gene: 189025785
Following gene: 189025787
Centisome position: 53.15
GC content: 56.55
Gene sequence:
>909_bases ATGAAGAAAGTAGGGGTGCGCGTTCGCGCGTGTATCCTGTGCGCGCTTGCCGCGTGCGCCACAGGCGTCCTTGCTAATCC TTTTTTTGGCGGCGCTCCCGCGCGCCCGCGGAGGCAGCGCACCCCGGAGCTTTTGCTGCGCAGATACGCGCTCGTCCATC AACGCCTCGGTGCCGCCATAGTACAGTGGAGCAAAACCCATTCAACACGCGCGTGGTGGATTACTGTAATGCTCTCCTTT GCGTATGGCGTTCTGCACGCCTTAGGACCAGGACACAGAAAGGCAGCGCTTTTTTCTTTCTACCTGGGGAGGAACGCACC TGTGTGGGAACCTGCGCTCACTGCAGCGTTACTTGCGGCGTTGCATGGCGCAGCTTCCCTGCTCTTGCTTTCTGCATTTA GAGGTGTGTCCGGTGCAATCGGTGCACACAGTGCACGCACAATGTGGTACATGGAGGTGGGTTCCTACGGACTGCTCACC TTCTTAGCGCTTTTCTCTCTCGTGCATGAGCTGATGCACCTTTTCCCTTCGGGCGGGCGCTATTTCTCCTGCGGTTGCAG CGCGCACACTGCCGTGTGTATGCGGACAGGAACAGTCGCCCACATGCAGTGGGGTACTATGCTCTTGAGCGGTTTATTTA TTTGCCCTGCTGCGTTGTTTGTGATGATTCTGGTGCTCAGCTTAGATGCAGTTGGACTTGGCGTCGCAGCGGTGCTCAGT ATTTCAGCGGGGTTAGCACTCCCCCTGATGGCTGTCGGTTATTTGGCCTGGGCGAGCCGGGCAGGTATTTTTTACCGCAT GCAGAAGAACACTCGTCATGCACAAGCGGTGCTTTCTGTCGTGAGCATTACCTCATACGGAATTATGCTCATCGTCTGTA CTTCAGCGCTCGTAGCTTCACTCGGTTGA
Upstream 100 bases:
>100_bases ACGAACACTGGCGTCCCGGTCTGCATACCTACTACCCAAAAGAGATTCTCCTGCGCTACACTGCCCCCTAAGGTCCTTTT CCAAGGGGAGTTGAGAGCGT
Downstream 100 bases:
>100_bases AAGGAGAATGTACCTCCGCTATCTAGGTGACACTGCCTGGATAAAACCATATACCTAACACGTGGTGAACGGAAGTACGC AGTATCTTGCACACGTCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MKKVGVRVRACILCALAACATGVLANPFFGGAPARPRRQRTPELLLRRYALVHQRLGAAIVQWSKTHSTRAWWITVMLSF AYGVLHALGPGHRKAALFSFYLGRNAPVWEPALTAALLAALHGAASLLLLSAFRGVSGAIGAHSARTMWYMEVGSYGLLT FLALFSLVHELMHLFPSGGRYFSCGCSAHTAVCMRTGTVAHMQWGTMLLSGLFICPAALFVMILVLSLDAVGLGVAAVLS ISAGLALPLMAVGYLAWASRAGIFYRMQKNTRHAQAVLSVVSITSYGIMLIVCTSALVASLG
Sequences:
>Translated_302_residues MKKVGVRVRACILCALAACATGVLANPFFGGAPARPRRQRTPELLLRRYALVHQRLGAAIVQWSKTHSTRAWWITVMLSF AYGVLHALGPGHRKAALFSFYLGRNAPVWEPALTAALLAALHGAASLLLLSAFRGVSGAIGAHSARTMWYMEVGSYGLLT FLALFSLVHELMHLFPSGGRYFSCGCSAHTAVCMRTGTVAHMQWGTMLLSGLFICPAALFVMILVLSLDAVGLGVAAVLS ISAGLALPLMAVGYLAWASRAGIFYRMQKNTRHAQAVLSVVSITSYGIMLIVCTSALVASLG >Mature_302_residues MKKVGVRVRACILCALAACATGVLANPFFGGAPARPRRQRTPELLLRRYALVHQRLGAAIVQWSKTHSTRAWWITVMLSF AYGVLHALGPGHRKAALFSFYLGRNAPVWEPALTAALLAALHGAASLLLLSAFRGVSGAIGAHSARTMWYMEVGSYGLLT FLALFSLVHELMHLFPSGGRYFSCGCSAHTAVCMRTGTVAHMQWGTMLLSGLFICPAALFVMILVLSLDAVGLGVAAVLS ISAGLALPLMAVGYLAWASRAGIFYRMQKNTRHAQAVLSVVSITSYGIMLIVCTSALVASLG
Specific function: Unknown
COG id: COG2215
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32207; Mature: 32207
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVGVRVRACILCALAACATGVLANPFFGGAPARPRRQRTPELLLRRYALVHQRLGAAI CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VQWSKTHSTRAWWITVMLSFAYGVLHALGPGHRKAALFSFYLGRNAPVWEPALTAALLAA HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH LHGAASLLLLSAFRGVSGAIGAHSARTMWYMEVGSYGLLTFLALFSLVHELMHLFPSGGR HHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC YFSCGCSAHTAVCMRTGTVAHMQWGTMLLSGLFICPAALFVMILVLSLDAVGLGVAAVLS EEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISAGLALPLMAVGYLAWASRAGIFYRMQKNTRHAQAVLSVVSITSYGIMLIVCTSALVAS HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LG CC >Mature Secondary Structure MKKVGVRVRACILCALAACATGVLANPFFGGAPARPRRQRTPELLLRRYALVHQRLGAAI CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VQWSKTHSTRAWWITVMLSFAYGVLHALGPGHRKAALFSFYLGRNAPVWEPALTAALLAA HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH LHGAASLLLLSAFRGVSGAIGAHSARTMWYMEVGSYGLLTFLALFSLVHELMHLFPSGGR HHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC YFSCGCSAHTAVCMRTGTVAHMQWGTMLLSGLFICPAALFVMILVLSLDAVGLGVAAVLS EEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISAGLALPLMAVGYLAWASRAGIFYRMQKNTRHAQAVLSVVSITSYGIMLIVCTSALVAS HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LG CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA