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The map label for this gene is rodA [H]

Identifier: 189025731

GI number: 189025731

Start: 537598

End: 538899

Strand: Direct

Name: rodA [H]

Synonym: TPASS_0501

Alternate gene names: 189025731

Gene position: 537598-538899 (Clockwise)

Preceding gene: 189025730

Following gene: 189025732

Centisome position: 47.18

GC content: 46.7

Gene sequence:

>1302_bases
ATGAGGATTCGCGGTGTCAGTGATTTTGACTACCTATTGCTTCTGACCATGCTGGCGTTGACCAGCATTGGTATCTTGTT
CATCTATTCTTCCGTGGTAAATTCAGAGGGACACGTTATTTCCAGAGAATACCTAAAACAAATAGTGTGGGCCGTCATGG
GTGTGGTGCTCATGCTTTCTGTGAGCATGTACGACTACCACAGGTTCAAGGATAGAACAACGCTTATTTTTGCAGGTTTT
ATATTGCTGCTGATATACACGCGGTTGTTTGGGCGGTATGTAAATGGTGCAAAAAGCTGGATCGGTGTGGGAGAATTCGG
CATTCAGATTTCTGAGTTTGCAAAGATCGCGTACATATTATACTTAGCGCACTATCTTGTTTATTCTCAGAGTGAGCCTA
TGCTTAAGCGCTTTGCGAAAGCGGGGGTGATTACCTTGCTGCCCATGGCGCTCATATTGTCTCAGCCGGATCTCGGCACT
GCATCCGTGTACCTGCCGATTTTTCTCGTTATGTGTTTTATTGCAGGATTTCCTCTCCGTTTGATTTTCGCGGTGGTTTG
TGTGGTCCTCCTGACTTTGCTCTTTACACTGTTGCCCCTTTGGGAGCAAACCTTTTTGCAATACCAGGGGGTGGCTACGC
GCATTGCAGATTCGCGTATGCTGTCGCTGTTTGTGTTTTTTTCTCTCAGCGCTACGTCTGCGGTAGCGGTGGTAGGGTAC
CTGCTCTCTGGAAGAAAATACTACTACTGGATTACTTACGCTTTGGGAATGGTGAGTATTTCTTATGGCGCATCGCTGCT
GGGAGTTCGGGTTTTAAAACCGTATCAGATGATGCGCCTGATCATTTTTCTCAATCCCGAGGTAGATCCACTCAAAGCGG
GATGGCACATTATCCAGTCAATGATCGCTATTGGCAGTGGCGGTGCGTTTGGAATGGGGTACTTGAGAGGACCGCAGAGC
CATTATCGATTTTTACCGCAGCAGAGTACTGATTTTATCTTCAGCATTCTTTCTGAAGAGTGGGGTTTTGTTGGCGGGGT
GATAGTGTTTGGTTTGTATCTGTTGTTCTTTCTGCATACGCTTTCCATCATGAGTCACGTTGATGATTTGTACGGTAAGC
TCATCGCAAGCGGTGTGTTGGGTATGTTCCTTTTTCACTTTGTAGTTAACGTGGGCATGACCATGGGAATCATGCCCATT
ACGGGTATTCCTCTGTTGCTCCTTTCGTATGGTGGATCGTCTCTGTGGACCGCGATGATTGCAACGGGACTCTTGATGAG
TATCAATGCAAGGCAGTTGTAA

Upstream 100 bases:

>100_bases
TTTTTCAGGGTATTTTTGCGAATGAGGATTATGAGCAAGCAGTTGAGTCGCTCAAGTCGTACGGCATTTCCCTTGGGGTG
CCGGCAAGGAGTCGGCAGGA

Downstream 100 bases:

>100_bases
ATAGAGTAAGGAAAGGACATTTGGTATGAAGGTGGTTCTCTTTTATGATCAAGGAAGAGCGCATTCAGTTGCTGCGATAT
GCGAGGTGCTTTGTGCACAA

Product: rod shape-determining protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MRIRGVSDFDYLLLLTMLALTSIGILFIYSSVVNSEGHVISREYLKQIVWAVMGVVLMLSVSMYDYHRFKDRTTLIFAGF
ILLLIYTRLFGRYVNGAKSWIGVGEFGIQISEFAKIAYILYLAHYLVYSQSEPMLKRFAKAGVITLLPMALILSQPDLGT
ASVYLPIFLVMCFIAGFPLRLIFAVVCVVLLTLLFTLLPLWEQTFLQYQGVATRIADSRMLSLFVFFSLSATSAVAVVGY
LLSGRKYYYWITYALGMVSISYGASLLGVRVLKPYQMMRLIIFLNPEVDPLKAGWHIIQSMIAIGSGGAFGMGYLRGPQS
HYRFLPQQSTDFIFSILSEEWGFVGGVIVFGLYLLFFLHTLSIMSHVDDLYGKLIASGVLGMFLFHFVVNVGMTMGIMPI
TGIPLLLLSYGGSSLWTAMIATGLLMSINARQL

Sequences:

>Translated_433_residues
MRIRGVSDFDYLLLLTMLALTSIGILFIYSSVVNSEGHVISREYLKQIVWAVMGVVLMLSVSMYDYHRFKDRTTLIFAGF
ILLLIYTRLFGRYVNGAKSWIGVGEFGIQISEFAKIAYILYLAHYLVYSQSEPMLKRFAKAGVITLLPMALILSQPDLGT
ASVYLPIFLVMCFIAGFPLRLIFAVVCVVLLTLLFTLLPLWEQTFLQYQGVATRIADSRMLSLFVFFSLSATSAVAVVGY
LLSGRKYYYWITYALGMVSISYGASLLGVRVLKPYQMMRLIIFLNPEVDPLKAGWHIIQSMIAIGSGGAFGMGYLRGPQS
HYRFLPQQSTDFIFSILSEEWGFVGGVIVFGLYLLFFLHTLSIMSHVDDLYGKLIASGVLGMFLFHFVVNVGMTMGIMPI
TGIPLLLLSYGGSSLWTAMIATGLLMSINARQL
>Mature_433_residues
MRIRGVSDFDYLLLLTMLALTSIGILFIYSSVVNSEGHVISREYLKQIVWAVMGVVLMLSVSMYDYHRFKDRTTLIFAGF
ILLLIYTRLFGRYVNGAKSWIGVGEFGIQISEFAKIAYILYLAHYLVYSQSEPMLKRFAKAGVITLLPMALILSQPDLGT
ASVYLPIFLVMCFIAGFPLRLIFAVVCVVLLTLLFTLLPLWEQTFLQYQGVATRIADSRMLSLFVFFSLSATSAVAVVGY
LLSGRKYYYWITYALGMVSISYGASLLGVRVLKPYQMMRLIIFLNPEVDPLKAGWHIIQSMIAIGSGGAFGMGYLRGPQS
HYRFLPQQSTDFIFSILSEEWGFVGGVIVFGLYLLFFLHTLSIMSHVDDLYGKLIASGVLGMFLFHFVVNVGMTMGIMPI
TGIPLLLLSYGGSSLWTAMIATGLLMSINARQL

Specific function: This is one of the proteins responsible for the rod shape of the cell [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=158, Percent_Identity=46.8354430379747, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1786277, Length=162, Percent_Identity=36.4197530864198, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 48388; Mature: 48388

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00428 FTSW_RODA_SPOVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRGVSDFDYLLLLTMLALTSIGILFIYSSVVNSEGHVISREYLKQIVWAVMGVVLMLS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHH
VSMYDYHRFKDRTTLIFAGFILLLIYTRLFGRYVNGAKSWIGVGEFGIQISEFAKIAYIL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCHHHHHHHHHHHH
YLAHYLVYSQSEPMLKRFAKAGVITLLPMALILSQPDLGTASVYLPIFLVMCFIAGFPLR
HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHH
LIFAVVCVVLLTLLFTLLPLWEQTFLQYQGVATRIADSRMLSLFVFFSLSATSAVAVVGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSGRKYYYWITYALGMVSISYGASLLGVRVLKPYQMMRLIIFLNPEVDPLKAGWHIIQS
HHCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHEECCCCCHHHHHHHHHHH
MIAIGSGGAFGMGYLRGPQSHYRFLPQQSTDFIFSILSEEWGFVGGVIVFGLYLLFFLHT
HHHHCCCCCCCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LSIMSHVDDLYGKLIASGVLGMFLFHFVVNVGMTMGIMPITGIPLLLLSYGGSSLWTAMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
ATGLLMSINARQL
HHHHHHHCCCCCC
>Mature Secondary Structure
MRIRGVSDFDYLLLLTMLALTSIGILFIYSSVVNSEGHVISREYLKQIVWAVMGVVLMLS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHH
VSMYDYHRFKDRTTLIFAGFILLLIYTRLFGRYVNGAKSWIGVGEFGIQISEFAKIAYIL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCHHHHHHHHHHHH
YLAHYLVYSQSEPMLKRFAKAGVITLLPMALILSQPDLGTASVYLPIFLVMCFIAGFPLR
HHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHH
LIFAVVCVVLLTLLFTLLPLWEQTFLQYQGVATRIADSRMLSLFVFFSLSATSAVAVVGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSGRKYYYWITYALGMVSISYGASLLGVRVLKPYQMMRLIIFLNPEVDPLKAGWHIIQS
HHCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHEECCCCCHHHHHHHHHHH
MIAIGSGGAFGMGYLRGPQSHYRFLPQQSTDFIFSILSEEWGFVGGVIVFGLYLLFFLHT
HHHHCCCCCCCCHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LSIMSHVDDLYGKLIASGVLGMFLFHFVVNVGMTMGIMPITGIPLLLLSYGGSSLWTAMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
ATGLLMSINARQL
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]