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The map label for this gene is yciL [C]

Identifier: 189025691

GI number: 189025691

Start: 490539

End: 491324

Strand: Direct

Name: yciL [C]

Synonym: TPASS_0459

Alternate gene names: 189025691

Gene position: 490539-491324 (Clockwise)

Preceding gene: 189025690

Following gene: 189025692

Centisome position: 43.05

GC content: 59.67

Gene sequence:

>786_bases
GTGTGCCGCCTGCAGCCGTTTTTTCGCCTCCGGTTACAGGTCTATTTAGCCAGGAGTGGCTGTGCCTCCCGGCGTGCCTG
TGAGGCCTTGATTGCTTCAGGGCGTGTGACCGTTGATGGTCAGACGGTTACGACACAGGGACGGACCGTTTGTGCGCAGA
ATGTGGTGTGTGTGGACGGCACCGTCGTGCAGCTTGAACGAGTTCAGCGCTACGTGCTCCTGTATAAGCCGGTTGGATAT
ATCTGTTCCCTCGCGCCGCAGTTTCCTGCCGGGTATGCACACACGCAGGTGCGGGCAGGCCCGTCCAAACAGGAATACGC
GCGTGCAATCGATTTAGTACAGCCTGCGTATCAGGAGCGCCTATATCACATCGGCCGGCTGGACGTGCGGTCTGAAGGCG
CGCTGCTGTTCACAAATGATGGTTCGTTTGCGCAGGCTCTTGGCCATCCGCGTTCGGGAATAGAGAAAGAGTACATTGTA
GAAACGCGTGAGCCAGTCCCTGCAGCGCTGTTGAGCTCTTTTGTGCGTGGGGTGTGGGTGGAAGGGTGCCGGTATCGGTG
CGTGCGCGCGCGGCATCTTGCAGCGCAGTGTGTACAGCTTGTACTGGTTGAGGGGAAAAAGCGCGAGATCCGTGTGGTAT
TCGAGGCGTGGGGACAGGATGTCGTGCGCTTAGTGCGGGTGCGCATTGGCAGGGTGCGTCTAGGACCGCTGAGGCCCGGA
GCATTTCGCACCATGAGGCTGCAGGAAGTTGCGCAGCTCTTGCAGTGCGCAGGGTGTGCGCGATAG

Upstream 100 bases:

>100_bases
CGGTTGCGCAGCATTGCAGACTTGCCCAAACTTGATGAAGAAGAGCAGCGGCGCTTTGAGCTTACCCGTTAAGCCGGGTG
AACAGAGGGTGCAGGGGAGG

Downstream 100 bases:

>100_bases
CAGGGACGTGGTTTTGACTGGCTGGGGGGAGGGTGACTGAAGGTGGGGTGTGCGCGGTGCTCGTATTTTGCGGGTGCTGC
TGGTATACTGCGCGCGCATA

Product: hypothetical protein

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MCRLQPFFRLRLQVYLARSGCASRRACEALIASGRVTVDGQTVTTQGRTVCAQNVVCVDGTVVQLERVQRYVLLYKPVGY
ICSLAPQFPAGYAHTQVRAGPSKQEYARAIDLVQPAYQERLYHIGRLDVRSEGALLFTNDGSFAQALGHPRSGIEKEYIV
ETREPVPAALLSSFVRGVWVEGCRYRCVRARHLAAQCVQLVLVEGKKREIRVVFEAWGQDVVRLVRVRIGRVRLGPLRPG
AFRTMRLQEVAQLLQCAGCAR

Sequences:

>Translated_261_residues
MCRLQPFFRLRLQVYLARSGCASRRACEALIASGRVTVDGQTVTTQGRTVCAQNVVCVDGTVVQLERVQRYVLLYKPVGY
ICSLAPQFPAGYAHTQVRAGPSKQEYARAIDLVQPAYQERLYHIGRLDVRSEGALLFTNDGSFAQALGHPRSGIEKEYIV
ETREPVPAALLSSFVRGVWVEGCRYRCVRARHLAAQCVQLVLVEGKKREIRVVFEAWGQDVVRLVRVRIGRVRLGPLRPG
AFRTMRLQEVAQLLQCAGCAR
>Mature_261_residues
MCRLQPFFRLRLQVYLARSGCASRRACEALIASGRVTVDGQTVTTQGRTVCAQNVVCVDGTVVQLERVQRYVLLYKPVGY
ICSLAPQFPAGYAHTQVRAGPSKQEYARAIDLVQPAYQERLYHIGRLDVRSEGALLFTNDGSFAQALGHPRSGIEKEYIV
ETREPVPAALLSSFVRGVWVEGCRYRCVRARHLAAQCVQLVLVEGKKREIRVVFEAWGQDVVRLVRVRIGRVRLGPLRPG
AFRTMRLQEVAQLLQCAGCAR

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787524, Length=233, Percent_Identity=32.618025751073, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788510, Length=248, Percent_Identity=27.4193548387097, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790453, Length=253, Percent_Identity=27.6679841897233, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29216; Mature: 29216

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRLQPFFRLRLQVYLARSGCASRRACEALIASGRVTVDGQTVTTQGRTVCAQNVVCVDG
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCEEECCCCCHHHCCEEEECC
TVVQLERVQRYVLLYKPVGYICSLAPQFPAGYAHTQVRAGPSKQEYARAIDLVQPAYQER
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHH
LYHIGRLDVRSEGALLFTNDGSFAQALGHPRSGIEKEYIVETREPVPAALLSSFVRGVWV
HHHHCCEEECCCCEEEEECCCCHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
EGCRYRCVRARHLAAQCVQLVLVEGKKREIRVVFEAWGQDVVRLVRVRIGRVRLGPLRPG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCHHHHHHHHHHHCCEEECCCCCC
AFRTMRLQEVAQLLQCAGCAR
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MCRLQPFFRLRLQVYLARSGCASRRACEALIASGRVTVDGQTVTTQGRTVCAQNVVCVDG
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCEEECCCCCHHHCCEEEECC
TVVQLERVQRYVLLYKPVGYICSLAPQFPAGYAHTQVRAGPSKQEYARAIDLVQPAYQER
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHH
LYHIGRLDVRSEGALLFTNDGSFAQALGHPRSGIEKEYIVETREPVPAALLSSFVRGVWV
HHHHCCEEECCCCEEEEECCCCHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
EGCRYRCVRARHLAAQCVQLVLVEGKKREIRVVFEAWGQDVVRLVRVRIGRVRLGPLRPG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHCHHHHHHHHHHHCCEEECCCCCC
AFRTMRLQEVAQLLQCAGCAR
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]