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The map label for this gene is scpB [H]

Identifier: 189025690

GI number: 189025690

Start: 489932

End: 490510

Strand: Direct

Name: scpB [H]

Synonym: TPASS_0458

Alternate gene names: 189025690

Gene position: 489932-490510 (Clockwise)

Preceding gene: 189025689

Following gene: 189025691

Centisome position: 43.0

GC content: 58.55

Gene sequence:

>579_bases
ATGGACCAAGCAGAGCCTTGCACGCTACACGGAGCACCCGCACCGGACCTTGCGCTTCTGGAGGCTATTTTGTTTGTCGA
AGGCGTGCGGCTCAGTTATGCGTGTCTTGCACGAAAGCTCGGTTTGAGCGAACAGGCAGTGGGTGAGTGTGTTGCGCGTT
TGGGTGAAGCTCTCGCTTCTGGCGCGCGTGGTGGTGGTGGACTGGAGCTTCACTGCAACGAGCAGGGTGTGGCGTTGCTG
CCTGCGGCGACCGTACGGGAGCGTCTTGCAACCCTCTATGGGAAGCGGAGCGAAGGGCGCCTTTCGCGCGCGGCAATGGA
AACGCTGTCTATTGTGGCCTATGCGCAGCCGGTGACGCGTGCTGAAATAGAGGCAATCCGAGGGGTAGGTGCAGATACAA
TGATCCGCCTTTTGAGTGAGCGCCGTCTGATTTGCGAGGTGGGGAAAAAGGACATACCCGGCAAGCCGGCGCAGTATGGC
ACGACTGAGGAGTTTTTGACTGCGTTCCGGTTGCGCAGCATTGCAGACTTGCCCAAACTTGATGAAGAAGAGCAGCGGCG
CTTTGAGCTTACCCGTTAA

Upstream 100 bases:

>100_bases
TAATCCGTAACGGAAGTCAGACAGGCGGGTGCCGTCTTCCCTGTCGTTAGATTGCATTGGGTGCTTGTAGGAGGGAGGGA
AAGAGCGTAGCATCGGCAGG

Downstream 100 bases:

>100_bases
GCCGGGTGAACAGAGGGTGCAGGGGAGGGTGTGCCGCCTGCAGCCGTTTTTTCGCCTCCGGTTACAGGTCTATTTAGCCA
GGAGTGGCTGTGCCTCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MDQAEPCTLHGAPAPDLALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGVALL
PAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRLLSERRLICEVGKKDIPGKPAQYG
TTEEFLTAFRLRSIADLPKLDEEEQRRFELTR

Sequences:

>Translated_192_residues
MDQAEPCTLHGAPAPDLALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGVALL
PAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRLLSERRLICEVGKKDIPGKPAQYG
TTEEFLTAFRLRSIADLPKLDEEEQRRFELTR
>Mature_192_residues
MDQAEPCTLHGAPAPDLALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALASGARGGGGLELHCNEQGVALL
PAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRLLSERRLICEVGKKDIPGKPAQYG
TTEEFLTAFRLRSIADLPKLDEEEQRRFELTR

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 20776; Mature: 20776

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQAEPCTLHGAPAPDLALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALAS
CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GARGGGGLELHCNEQGVALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTR
CCCCCCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHH
AEIEAIRGVGADTMIRLLSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
DEEEQRRFELTR
CHHHHHHHCCCC
>Mature Secondary Structure
MDQAEPCTLHGAPAPDLALLEAILFVEGVRLSYACLARKLGLSEQAVGECVARLGEALAS
CCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GARGGGGLELHCNEQGVALLPAATVRERLATLYGKRSEGRLSRAAMETLSIVAYAQPVTR
CCCCCCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHH
AEIEAIRGVGADTMIRLLSERRLICEVGKKDIPGKPAQYGTTEEFLTAFRLRSIADLPKL
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
DEEEQRRFELTR
CHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA